View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_low_5 (Length: 577)

Name: NF7241_low_5
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_low_5
NF7241_low_5
[»] chr1 (8 HSPs)
chr1 (52-470)||(4887660-4888068)
chr1 (446-568)||(4888235-4888358)
chr1 (140-182)||(34721844-34721886)
chr1 (143-233)||(38797572-38797672)
chr1 (186-234)||(2099628-2099676)
chr1 (140-176)||(14334073-14334109)
chr1 (52-169)||(34387710-34387828)
chr1 (138-176)||(47411715-47411753)
[»] chr6 (2 HSPs)
chr6 (78-234)||(3482022-3482190)
chr6 (245-292)||(16540227-16540274)
[»] chr3 (5 HSPs)
chr3 (243-292)||(21261228-21261277)
chr3 (186-229)||(25359520-25359563)
chr3 (457-516)||(30822536-30822595)
chr3 (52-106)||(50321839-50321893)
chr3 (143-171)||(50550616-50550644)
[»] chr5 (6 HSPs)
chr5 (140-234)||(42858147-42858252)
chr5 (138-182)||(28110442-28110486)
chr5 (143-182)||(18851086-18851125)
chr5 (143-182)||(38845485-38845524)
chr5 (187-233)||(6813379-6813425)
chr5 (252-292)||(38265061-38265101)
[»] chr8 (7 HSPs)
chr8 (182-234)||(7244522-7244573)
chr8 (138-182)||(39753941-39753985)
chr8 (145-234)||(44141001-44141091)
chr8 (140-176)||(38868537-38868573)
chr8 (143-182)||(13384658-13384697)
chr8 (189-233)||(32101172-32101216)
chr8 (140-168)||(40769385-40769413)
[»] chr4 (7 HSPs)
chr4 (182-234)||(33456464-33456516)
chr4 (140-176)||(53913587-53913623)
chr4 (140-174)||(30357551-30357585)
chr4 (243-292)||(43385320-43385369)
chr4 (244-293)||(53713479-53713527)
chr4 (143-171)||(8604637-8604665)
chr4 (143-171)||(21691227-21691255)
[»] chr2 (5 HSPs)
chr2 (186-234)||(13912883-13912931)
chr2 (52-182)||(3352026-3352157)
chr2 (138-234)||(33019097-33019204)
chr2 (244-292)||(9143094-9143142)
chr2 (244-292)||(12037178-12037226)
[»] scaffold0168 (2 HSPs)
scaffold0168 (245-292)||(31949-31996)
scaffold0168 (252-292)||(32035-32075)
[»] chr7 (1 HSPs)
chr7 (184-217)||(40431536-40431569)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 52 - 470
Target Start/End: Original strand, 4887660 - 4888068
Alignment:
Q  52 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatttataattgattt 151  Q
    |||||||||||||||||||||||||||| ||     ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  4887660 attctgatatgttttgttgttgtttagttga-----ttttgtctttagaattggtcaaatttaaagttaagatttgtaaccattgatttagaattgattt 4887754  T
Q  152 tcacacacaaatttatagttaaacttactttattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattcaacataatcaaattact 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4887755 tcacacacaaatttatagttaaacttactttattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattcaacgtaatcaaattact 4887854  T
Q  252 tttaaccaaaatcaaatcaacataatcaattttatcaaaatgctcattgccacactaccaaactcacgtcgagcaaataggtttgtttgtacatcaccat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||     ||||| ||||||||||    
T  4887855 tttaaccaaaatcaaatcaacataatcaattttatcaaaatgctcatcgccacactaccaaactcacgtccagcaaata---ccgtttgcacatcaccat 4887951  T
Q  352 ctccaaatgcacatctatcttgctcctaccgtggtttctaagaagctacaaagccaaccatctttgttgtcgtggttttcacaaacttggcgtatattca 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  4887952 ctccaaatgcacatctatcttgctcctaccgtggtttctaagaagctacaaagccaaccatctttcttgtcatggttttcacaaacttggcatatattca 4888051  T
Q  452 aatagggaaaatgctacat 470  Q
    |||  |||||||| |||||    
T  4888052 aat--ggaaaatgttacat 4888068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 446 - 568
Target Start/End: Original strand, 4888235 - 4888358
Alignment:
Q  446 tattcaaatagggaaaatgctacataatgc-gacaaaagttatctagaatttgtcccgaatcaatctaattggctacttagaatcactaaccgaatgttt 544  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4888235 tattcaaatagggaaaatgctacataatgccgacaaaagttatttagaatttgtcccgaatcaatctaattggctacttagaatcactaaccgaatgttt 4888334  T
Q  545 tccacaaaatatgtaacttgatga 568  Q
    ||||||||||||| ||||||||||    
T  4888335 tccacaaaatatggaacttgatga 4888358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 34721886 - 34721844
Alignment:
Q  140 tataattgattttcacacacaaatttatagttaaacttacttt 182  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  34721886 tataattgattttcacacacaaatttatagttcgacttacttt 34721844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 38797672 - 38797572
Alignment:
Q  143 aattgattttcacacacaaatttatagttaaacttactt----------tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaat 232  Q
    ||||||||||||||||||||||||||||| |||| ||||          ||| |||||| |||||||||||  ||||| ||||||||| |||||||||||    
T  38797672 aattgattttcacacacaaatttatagttcaactcacttttaaataatgtatgcaaacataaatcacttttaatcaaatttatttttaaccaaaatcaat 38797573  T
Q  233 t 233  Q
    |    
T  38797572 t 38797572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 2099676 - 2099628
Alignment:
Q  186 caaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 234  Q
    ||||||||||||||||||  ||||||||| ||||| |||||||||||||    
T  2099676 caaacacaaatcacttttactcaaaattacttttaaccaaaatcaattc 2099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 14334109 - 14334073
Alignment:
Q  140 tataattgattttcacacacaaatttatagttaaact 176  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14334109 tataattgattttcatacacaaatttatagttaaact 14334073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 34387828 - 34387710
Alignment:
Q  52 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatt-tataattgatt 150  Q
    ||||||| || ||||||||||||| |||||||   || ||||||| | |||||||   | || |||||  || ||||| |  |||||| |||||||||||    
T  34387828 attctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatt 34387729  T
Q  151 ttcacacacaaatttatag 169  Q
    |||||||||||||||||||    
T  34387728 ttcacacacaaatttatag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 47411753 - 47411715
Alignment:
Q  138 tttataattgattttcacacacaaatttatagttaaact 176  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  47411753 tttataattgatttttacaaacaaatttatagttaaact 47411715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 3482022 - 3482190
Alignment:
Q  78 gtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgattt-ataattgattttcacacacaaatttatagttaaact 176  Q
    |||||||  ||| |||||||||||||||| | | || ||||||||||||| | || ||||||| | ||||||||||||||||||| ||||||||| ||||    
T  3482022 gtagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T
Q  177 tactt-----------tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 234  Q
    |||||           ||||||||||||||||||||||  | | ||| ||||||| |||||||||||||    
T  3482122 tacttttacatgaatgtattcaaacacaaatcacttttattgagaatcatttttaaccaaaatcaattc 3482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 16540227 - 16540274
Alignment:
Q  245 aattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    |||||||| ||||||||||||| || |||||||||||| |||||||||    
T  16540227 aattacttctaaccaaaatcaattctacataatcaattctatcaaaat 16540274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 21261277 - 21261228
Alignment:
Q  243 caaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||    
T  21261277 caaattacttttaaccaaaatcaattctacataatcaattttatcaaaat 21261228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 25359563 - 25359520
Alignment:
Q  186 caaacacaaatcacttttggtcaaaattatttttagccaaaatc 229  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||    
T  25359563 caaacacaaatcactttttgtcagaattatttttaaccaaaatc 25359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 516
Target Start/End: Original strand, 30822536 - 30822595
Alignment:
Q  457 ggaaaatgctacataatgcgacaaaagttatctagaatttgtcccgaatcaatctaattg 516  Q
    |||||||||||||||| |||| | |||||||   ||||||||| ||||||||||||||||    
T  30822536 ggaaaatgctacataacgcgatagaagttattccgaatttgtcacgaatcaatctaattg 30822595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 50321893 - 50321839
Alignment:
Q  52 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgat 106  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||  |||||||||    
T  50321893 attctgacatgtttggttgttttttagtagaattaattttgtctcaagaattgat 50321839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 50550616 - 50550644
Alignment:
Q  143 aattgattttcacacacaaatttatagtt 171  Q
    |||||||||||||||||||||||||||||    
T  50550616 aattgattttcacacacaaatttatagtt 50550644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 42858147 - 42858252
Alignment:
Q  140 tataattgattttcacacacaaatttatagttaaacttac-----------tttattcaaacacaaatcacttttggtcaaaattatttttagccaaaat 228  Q
    |||||||||||||||||||||||||||||||| |||| ||           |||||||||||||| ||||||||| |||| ||| ||||||| |||||||    
T  42858147 tataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaat 42858246  T
Q  229 caattc 234  Q
    ||||||    
T  42858247 caattc 42858252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 28110486 - 28110442
Alignment:
Q  138 tttataattgattttcacacacaaatttatagttaaacttacttt 182  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||    
T  28110486 tttagaattgattttcacacacaaatttatagttgaactcacttt 28110442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 18851125 - 18851086
Alignment:
Q  143 aattgattttcacacacaaatttatagttaaacttacttt 182  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  18851125 aattgattttcacacacatatttatagttaaactcacttt 18851086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 38845485 - 38845524
Alignment:
Q  143 aattgattttcacacacaaatttatagttaaacttacttt 182  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  38845485 aattgattttcacacacaaatatatagttaaactcacttt 38845524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 6813379 - 6813425
Alignment:
Q  187 aaacacaaatcacttttggtcaaaattatttttagccaaaatcaatt 233  Q
    ||||||| | ||||||||||||||||||||||||  |||||||||||    
T  6813379 aaacacataccacttttggtcaaaattatttttaatcaaaatcaatt 6813425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 38265061 - 38265101
Alignment:
Q  252 tttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    ||||||||||||||| || ||| ||||||||||||||||||    
T  38265061 tttaaccaaaatcaattctacaaaatcaattttatcaaaat 38265101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 7244573 - 7244522
Alignment:
Q  182 tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 234  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  7244573 tattcaaacacaaatcacttttggtc-aagttatttttaaccaaaatcaattc 7244522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 39753941 - 39753985
Alignment:
Q  138 tttataattgattttcacacacaaatttatagttaaacttacttt 182  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  39753941 tttataattgtttttcacacacaaatttatagtttaacttacttt 39753985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 44141091 - 44141001
Alignment:
Q  145 ttgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 234  Q
    |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||||||| |||| ||| | ||||| |||||||||||||    
T  44141091 ttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattc 44141001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 38868537 - 38868573
Alignment:
Q  140 tataattgattttcacacacaaatttatagttaaact 176  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38868537 tataattgattttcacacacaaatttatagttcaact 38868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 13384697 - 13384658
Alignment:
Q  143 aattgattttcacacacaaatttatagttaaacttacttt 182  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13384697 aattgattttcacacacaaatttatagttcaactcacttt 13384658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 32101172 - 32101216
Alignment:
Q  189 acacaaatcacttttggtcaaaattatttttagccaaaatcaatt 233  Q
    |||||||||||||||| ||  ||||||||||| ||||||||||||    
T  32101172 acacaaatcacttttgatcgtaattatttttaaccaaaatcaatt 32101216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 40769413 - 40769385
Alignment:
Q  140 tataattgattttcacacacaaatttata 168  Q
    |||||||||||||||||||||||||||||    
T  40769413 tataattgattttcacacacaaatttata 40769385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 33456464 - 33456516
Alignment:
Q  182 tattcaaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 234  Q
    |||||||||| |||| ||||||||||||||||| ||||| |||||||||||||    
T  33456464 tattcaaacataaataacttttggtcaaaattacttttaaccaaaatcaattc 33456516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 53913623 - 53913587
Alignment:
Q  140 tataattgattttcacacacaaatttatagttaaact 176  Q
    ||||||||||||||||||| |||||||||||||||||    
T  53913623 tataattgattttcacacataaatttatagttaaact 53913587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 30357551 - 30357585
Alignment:
Q  140 tataattgattttcacacacaaatttatagttaaa 174  Q
    ||||||||||||| |||||||||||||||||||||    
T  30357551 tataattgatttttacacacaaatttatagttaaa 30357585  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 43385369 - 43385320
Alignment:
Q  243 caaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    ||||| |||||||| ||||||||| || | ||||||||||||||||||||    
T  43385369 caaatcacttttaatcaaaatcaattctatataatcaattttatcaaaat 43385320  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 53713527 - 53713479
Alignment:
Q  244 aaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaatg 293  Q
    |||||||||||||| |||||||| |  |||||||||||||||||||||||    
T  53713527 aaattacttttaac-aaaatcaattttacataatcaattttatcaaaatg 53713479  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 8604665 - 8604637
Alignment:
Q  143 aattgattttcacacacaaatttatagtt 171  Q
    |||||||||||||||||||||||||||||    
T  8604665 aattgattttcacacacaaatttatagtt 8604637  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 21691255 - 21691227
Alignment:
Q  143 aattgattttcacacacaaatttatagtt 171  Q
    |||||||||||||||||||||||||||||    
T  21691255 aattgattttcacacacaaatttatagtt 21691227  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 13912883 - 13912931
Alignment:
Q  186 caaacacaaatcacttttggtcaaaattatttttagccaaaatcaattc 234  Q
    |||||||||||||||||| |||| ||||| ||||| |||||||||||||    
T  13912883 caaacacaaatcactttttgtcagaattaattttaaccaaaatcaattc 13912931  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 3352026 - 3352157
Alignment:
Q  52 attctgatatgttttgttgttgtttagtagaataaattttgtctttagaattgatcaaatttaaagttaagatttgcaaccattgatt-tataattgatt 150  Q
    ||||||| || ||||||||||||| |||||||   || ||||||| | |||||||   | || |||||  || ||||| |  |||||| |||||||||||    
T  3352026 attctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatt 3352125  T
Q  151 ttcacacacaaatttatagttaaacttacttt 182  Q
    |||||||||||||||||  || ||||||||||    
T  3352126 ttcacacacaaatttatgtttcaacttacttt 3352157  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 33019204 - 33019097
Alignment:
Q  138 tttataattgattttcacacacaaatttatagttaaacttacttt-----------attcaaacacaaatcacttttggtcaaaattatttttagccaaa 226  Q
    |||| |||||||||||||||| |||||||||||| |||| |||||           || |||||||||||||||||| |||| ||| | ||||| |||||    
T  33019204 tttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaa 33019105  T
Q  227 atcaattc 234  Q
    ||||||||    
T  33019104 atcaattc 33019097  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 9143094 - 9143142
Alignment:
Q  244 aaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    ||||||| |||||| |||||||| || |||||||||||||||| |||||    
T  9143094 aaattacatttaactaaaatcaattctacataatcaattttattaaaat 9143142  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 12037178 - 12037226
Alignment:
Q  244 aaattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    |||| ||||||||||||||| |  ||||||||||||||||||| |||||    
T  12037178 aaatcacttttaaccaaaataagttcaacataatcaattttataaaaat 12037226  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 31949 - 31996
Alignment:
Q  245 aattacttttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    |||||||| ||||||||||||| || |||||||||||| |||||||||    
T  31949 aattacttctaaccaaaatcaattctacataatcaattctatcaaaat 31996  T

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Target: scaffold0168; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 32035 - 32075
Alignment:
Q  252 tttaaccaaaatcaaatcaacataatcaattttatcaaaat 292  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  32035 tttaaccaaaatcaattctacataatcaattctatcaaaat 32075  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 40431569 - 40431536
Alignment:
Q  184 ttcaaacacaaatcacttttggtcaaaattattt 217  Q
    |||||||||||||||||||| |||||||||||||    
T  40431569 ttcaaacacaaatcacttttagtcaaaattattt 40431536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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