View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_low_6 (Length: 529)

Name: NF7241_low_6
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_low_6
NF7241_low_6
[»] chr1 (36 HSPs)
chr1 (1-517)||(31745095-31745610)
chr1 (69-215)||(40377012-40377158)
chr1 (69-216)||(7549813-7549960)
chr1 (94-207)||(36393479-36393592)
chr1 (94-215)||(50974564-50974685)
chr1 (69-201)||(45584509-45584641)
chr1 (69-215)||(31652593-31652738)
chr1 (69-216)||(44719151-44719298)
chr1 (94-186)||(4039621-4039713)
chr1 (94-215)||(5851530-5851649)
chr1 (93-199)||(25302066-25302172)
chr1 (69-170)||(25095579-25095680)
chr1 (72-207)||(34596118-34596250)
chr1 (92-180)||(45753443-45753531)
chr1 (121-215)||(12148289-12148383)
chr1 (69-178)||(34445639-34445748)
chr1 (99-207)||(12636305-12636414)
chr1 (94-207)||(40203076-40203189)
chr1 (94-177)||(5115634-5115717)
chr1 (72-178)||(28672315-28672420)
chr1 (92-213)||(5787434-5787554)
chr1 (126-208)||(42850094-42850176)
chr1 (124-201)||(50222611-50222688)
chr1 (94-181)||(33744159-33744246)
chr1 (120-215)||(48947225-48947320)
chr1 (69-210)||(13954126-13954271)
chr1 (99-181)||(39241430-39241512)
chr1 (125-181)||(48253319-48253375)
chr1 (119-198)||(44442270-44442349)
chr1 (95-180)||(3338051-3338137)
chr1 (93-147)||(5597710-5597764)
chr1 (69-131)||(27396102-27396164)
chr1 (116-214)||(50328308-50328405)
chr1 (88-181)||(14774091-14774184)
chr1 (97-170)||(28171517-28171590)
chr1 (134-178)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (69-215)||(49446583-49446730)
chr4 (69-208)||(44646522-44646661)
chr4 (94-207)||(44647879-44647992)
chr4 (70-214)||(42197007-42197150)
chr4 (69-190)||(6316821-6316942)
chr4 (88-200)||(9802621-9802732)
chr4 (97-212)||(20390023-20390138)
chr4 (86-201)||(42844030-42844145)
chr4 (95-215)||(41468080-41468200)
chr4 (97-191)||(33982423-33982517)
chr4 (119-209)||(44088286-44088376)
chr4 (73-181)||(25196110-25196218)
chr4 (111-204)||(50115059-50115149)
chr4 (69-170)||(40480205-40480306)
chr4 (94-181)||(12103864-12103951)
chr4 (94-207)||(24395194-24395308)
chr4 (110-200)||(49144774-49144864)
chr4 (134-215)||(38494748-38494829)
chr4 (69-148)||(28165362-28165442)
chr4 (98-180)||(39727579-39727660)
chr4 (69-181)||(50086432-50086543)
chr4 (97-170)||(34235910-34235984)
chr4 (134-200)||(36721591-36721657)
chr4 (103-212)||(49769110-49769219)
chr4 (111-170)||(31871090-31871149)
chr4 (69-199)||(52373050-52373181)
chr4 (134-216)||(41370157-41370239)
chr4 (110-199)||(1696194-1696283)
chr4 (94-167)||(53919863-53919936)
chr4 (94-186)||(27346293-27346385)
chr4 (92-167)||(5387947-5388022)
chr4 (95-197)||(51105918-51106020)
chr4 (99-148)||(27706954-27707003)
chr4 (92-200)||(27981368-27981477)
chr4 (69-130)||(44088211-44088272)
chr4 (69-198)||(52650697-52650826)
chr4 (93-181)||(11875452-11875539)
chr4 (69-168)||(23230272-23230372)
chr4 (69-181)||(47560596-47560707)
[»] chr3 (29 HSPs)
chr3 (69-215)||(34758899-34759045)
chr3 (70-215)||(54911988-54912133)
chr3 (94-215)||(18399149-18399271)
chr3 (70-207)||(30687077-30687214)
chr3 (69-208)||(27968170-27968307)
chr3 (69-208)||(52340118-52340257)
chr3 (81-199)||(38388694-38388812)
chr3 (69-180)||(28434481-28434591)
chr3 (69-170)||(779710-779810)
chr3 (69-186)||(38704969-38705086)
chr3 (105-203)||(7754772-7754871)
chr3 (94-207)||(4033026-4033138)
chr3 (116-207)||(19898100-19898191)
chr3 (114-181)||(55110042-55110109)
chr3 (70-207)||(25548196-25548333)
chr3 (98-172)||(43749507-43749581)
chr3 (110-180)||(53433211-53433281)
chr3 (97-152)||(1680511-1680566)
chr3 (90-181)||(2831538-2831629)
chr3 (94-178)||(39976721-39976804)
chr3 (114-189)||(54955783-54955859)
chr3 (93-147)||(11404700-11404754)
chr3 (120-170)||(40546348-40546398)
chr3 (340-401)||(9213512-9213572)
chr3 (69-106)||(29497248-29497285)
chr3 (69-114)||(29611990-29612035)
chr3 (125-181)||(21490626-21490682)
chr3 (106-170)||(30463992-30464056)
chr3 (112-152)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (69-212)||(8247037-8247180)
chr5 (69-214)||(3263717-3263862)
chr5 (72-215)||(19692696-19692840)
chr5 (97-208)||(5356295-5356406)
chr5 (95-215)||(35395184-35395304)
chr5 (69-214)||(10051700-10051845)
chr5 (69-210)||(28793305-28793446)
chr5 (71-208)||(1354345-1354481)
chr5 (97-215)||(22473432-22473551)
chr5 (94-190)||(21582367-21582463)
chr5 (76-178)||(14042440-14042542)
chr5 (95-192)||(31889611-31889709)
chr5 (69-152)||(4725897-4725979)
chr5 (124-210)||(142350-142436)
chr5 (92-146)||(22871913-22871967)
chr5 (93-178)||(3758194-3758279)
chr5 (106-178)||(26663642-26663714)
chr5 (106-178)||(26935237-26935309)
chr5 (72-207)||(14474998-14475133)
chr5 (69-147)||(27650866-27650944)
chr5 (95-148)||(37976444-37976497)
chr5 (93-147)||(12933327-12933381)
chr5 (106-152)||(24241210-24241256)
chr5 (121-178)||(24241039-24241096)
chr5 (156-216)||(43145883-43145943)
[»] chr2 (27 HSPs)
chr2 (69-216)||(8789826-8789973)
chr2 (69-214)||(44941072-44941216)
chr2 (69-212)||(20682990-20683133)
chr2 (94-208)||(8773670-8773784)
chr2 (92-190)||(4238341-4238438)
chr2 (92-215)||(18053008-18053130)
chr2 (94-207)||(42945012-42945125)
chr2 (69-180)||(6761751-6761862)
chr2 (97-207)||(2393038-2393148)
chr2 (94-208)||(34546265-34546379)
chr2 (81-207)||(42966938-42967066)
chr2 (107-179)||(1070568-1070639)
chr2 (69-214)||(5961954-5962101)
chr2 (367-450)||(10069229-10069312)
chr2 (69-183)||(3882586-3882700)
chr2 (72-164)||(433551-433643)
chr2 (93-145)||(8898861-8898913)
chr2 (69-181)||(18227092-18227204)
chr2 (95-178)||(2825983-2826066)
chr2 (81-148)||(13442636-13442703)
chr2 (97-181)||(35228732-35228816)
chr2 (94-152)||(3199541-3199599)
chr2 (92-199)||(7271769-7271880)
chr2 (70-207)||(14102297-14102435)
chr2 (93-178)||(31448315-31448400)
chr2 (99-152)||(45212057-45212110)
chr2 (93-181)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (95-215)||(30412910-30413030)
chr7 (69-215)||(8170001-8170147)
chr7 (105-215)||(48137789-48137899)
chr7 (94-188)||(42493703-42493798)
chr7 (69-200)||(47507580-47507711)
chr7 (73-211)||(38452146-38452283)
chr7 (99-196)||(2964049-2964146)
chr7 (69-201)||(16878677-16878809)
chr7 (96-207)||(44391426-44391537)
chr7 (135-211)||(46684550-46684626)
chr7 (92-183)||(5248088-5248179)
chr7 (94-186)||(2741168-2741260)
chr7 (92-210)||(15034793-15034911)
chr7 (97-205)||(43670409-43670517)
chr7 (140-215)||(47305516-47305592)
chr7 (89-178)||(676400-676488)
chr7 (81-180)||(37352436-37352535)
chr7 (86-170)||(33887887-33887971)
chr7 (69-213)||(36015002-36015141)
chr7 (95-209)||(36285774-36285887)
chr7 (69-152)||(45375399-45375483)
chr7 (134-181)||(15995924-15995971)
chr7 (72-181)||(35754017-35754126)
chr7 (121-197)||(44495238-44495314)
chr7 (134-181)||(14574768-14574815)
chr7 (63-170)||(35599837-35599944)
chr7 (92-181)||(31477085-31477175)
chr7 (68-181)||(10031945-10032058)
chr7 (91-144)||(25120218-25120271)
chr7 (140-207)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (69-215)||(31206280-31206426)
chr8 (99-207)||(38956884-38956992)
chr8 (92-216)||(5217747-5217869)
chr8 (94-199)||(45368729-45368834)
chr8 (95-208)||(5020051-5020162)
chr8 (96-207)||(20169716-20169827)
chr8 (69-210)||(9632898-9633040)
chr8 (66-148)||(33636685-33636767)
chr8 (72-198)||(39691121-39691247)
chr8 (94-207)||(7044329-7044442)
chr8 (69-169)||(24103087-24103187)
chr8 (69-161)||(39932721-39932813)
chr8 (69-207)||(10335020-10335159)
chr8 (94-132)||(36819755-36819793)
chr8 (69-144)||(37564393-37564468)
chr8 (70-132)||(2124141-2124203)
chr8 (69-129)||(5968377-5968437)
chr8 (69-181)||(22209376-22209488)
[»] chr6 (13 HSPs)
chr6 (94-215)||(12383008-12383129)
chr6 (94-207)||(16442075-16442188)
chr6 (97-192)||(8176324-8176419)
chr6 (95-178)||(12307821-12307904)
chr6 (69-198)||(31702747-31702874)
chr6 (72-180)||(7465451-7465558)
chr6 (138-213)||(22695473-22695549)
chr6 (70-141)||(22696000-22696071)
chr6 (98-196)||(35241410-35241509)
chr6 (94-207)||(6048268-6048381)
chr6 (344-396)||(32045160-32045211)
chr6 (97-178)||(26311807-26311889)
chr6 (69-170)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (69-170)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 31745610 - 31745095
Alignment:
Q  1 aaaacatgtcataacaaaaatatttaattatgacaagaacagtgttgagttaatnnnnnnngttaattgtcttgttaaccagtgcctccgagacactctt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||| |||||||    
T  31745610 aaaacatgtcataacataaatatttaattatgacaagaacagtgttgagttaataaaaaa-gttaattgtcttgttaactagtgcctccgaggcactctt 31745512  T
Q  101 taaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31745511 taaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttttatgataagttactatttaaag 31745412  T
Q  201 gccttaactagtgcctagtgccttggtaatcagcaagaaaagtatatggacgaaaatggtgcttaaaaatatgttcaaagtttacaattaccatttttag 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745411 gccttaactagtgcctagtgcctcggtaatcagcaagaaaagtatatggaccaaaatggtgcttaaaaatatgttcaaagtttacaattaccatttttag 31745312  T
Q  301 tattttttaataaattattgaatctcattctcttactataaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatgaatc 400  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||    
T  31745311 tattttttaataaattattgaatcttattctcttactataaaatactccatccggtcctttttataaaaagacatttaaatcaataaaagttgatgtatc 31745212  T
Q  401 tagttaaataattggactagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtctattattttggtaattggtatagac 500  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31745211 tagttaaataattggaccagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtatattattttggtaattggtatagac 31745112  T
Q  501 tcttttttgatgtccat 517  Q
    |||||||||| ||||||    
T  31745111 tcttttttgaggtccat 31745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 40377012 - 40377158
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| |   | |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||| | || |||||||||    
T  40377012 gtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatta 40377111  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    ||||  |||||||||||| |||| |||||||||||||||||||||||    
T  40377112 cacaacttttcatgataaattaccatttaaaggccttaactagtgcc 40377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 7549813 - 7549960
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| |  || ||||||||||||  |||  ||||||| |||| ||||||||| |||||||||||||||||||   ||||||||||| |    
T  7549813 gtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatca 7549912  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcct 216  Q
    ||||  ||||||||||||||||| |||||||||||||| |||||||||    
T  7549913 cacaacttttcatgataagttacaatttaaaggccttagctagtgcct 7549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 36393479 - 36393592
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||| ||||  ||||||| ||||||| |||||| ||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |    
T  36393479 cactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagttacca 36393578  T
Q  194 tttaaaggccttaa 207  Q
    |||||||| |||||    
T  36393579 tttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 50974685 - 50974564
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    ||||||| || ||||  ||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||| |||| |    
T  50974685 cactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacca 50974586  T
Q  194 tttaaaggccttaactagtgcc 215  Q
    |||||||| |||||| ||||||    
T  50974585 tttaaaggtcttaacgagtgcc 50974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 45584509 - 45584641
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| | |||| ||| | |||||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||  |||   |||| ||||||||    
T  45584509 gtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatta 45584608  T
Q  169 cacatattttcatgataagttactatttaaagg 201  Q
    |||||||||||||||||||||||| ||||||||    
T  45584609 cacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 31652593 - 31652738
Alignment:
Q  69 gtcttgttaaccagtgcctccg-agacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||||||||| |||| ||||| ||| ||||||||| ||||  |||| || |||||||||||||| ||||||||||||||  |||  ||||||| |||||    
T  31652593 gtcttgttaacgagtgtctccggaga-actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T
Q  168 acacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  31652691 acacatattttcatgataggttaccatttaaagcccttaactagtgcc 31652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 44719151 - 44719298
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| | ||| |||||| ||||| ||||| |||| |||| |||||||||||| ||||| ||||||| |||||   |||||| ||||||    
T  44719151 gtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatatattattttataaaaaagttaaatattccgatttctgatgcaatgatta 44719250  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcct 216  Q
    |||| ||||||||||||| |||| ||||||||  ||||||||||||||    
T  44719251 cacacattttcatgataaattaccatttaaagctcttaactagtgcct 44719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 4039713 - 4039621
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 186  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||  | |||||||||||||| ||||||| |||||||    
T  4039713 cactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 5851530 - 5851649
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||| ||||  ||||||| |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||| |||  ||||||||||||||| |    
T  5851530 cactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaata--ttcatgataagttacca 5851627  T
Q  194 tttaaaggccttaactagtgcc 215  Q
    ||||||||| ||| ||||||||    
T  5851628 tttaaaggctttatctagtgcc 5851649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 25302066 - 25302172
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 192  Q
    ||||||||||| ||||| |||| || |||| ||| ||||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||     
T  25302066 acactctttaaggattccaaaacaaaaaataattgtataaaaaagtcaaagatttcgattttcaatacattgattacacatattttcatgataagttacc 25302165  T
Q  193 atttaaa 199  Q
    |||||||    
T  25302166 atttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 25095579 - 25095680
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||| | |||| ||||  |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||||||||    
T  25095579 gtcttgttagcgagtgtctccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T
Q  169 ca 170  Q
    ||    
T  25095679 ca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 34596250 - 34596118
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 171  Q
    ||||||||  ||||||||| |||| || |||| ||||||||||||| ||||||||||||||  || ||||||||||||||| || |||||||||||||||    
T  34596250 ttgttaacgggtgcctccg-gacattcattaaggattctaaaagaagaaattattttataa--aattcaaatatttcgattttcaatgcattgattacac 34596154  T
Q  172 atattttcatgataagttactatttaaaggccttaa 207  Q
    ||| |||||| | ||||||  ||||||||| |||||    
T  34596153 ataatttcataaaaagttatcatttaaaggtcttaa 34596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 45753443 - 45753531
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 180  Q
    |||||||||||||||||||||||||| ||||||||| | || || |||||||||||| ||| || |||||||||||||||| |||||||    
T  45753443 gacactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttca 45753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 12148383 - 12148289
Alignment:
Q  121 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    |||||||||| | ||||| |||||||| ||||  | |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  12148383 attattttatgaaaaagtaaaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaagactttaactagtgcc 12148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 34445639 - 34445748
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| |||   |||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||  | ||||||||||||    
T  34445639 gtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T
Q  169 cacatatttt 178  Q
     |||| ||||    
T  34445739 gacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 12636414 - 12636305
Alignment:
Q  99 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat-gataagttactattta 197  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||||  | || ||||||||||||||||||||||  | || ||||||||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  198 aaggccttaa 207  Q
    |||| |||||    
T  12636314 aaggtcttaa 12636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 40203189 - 40203076
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||| ||||  |||| || ||||||||| |||| ||||||||||||||| |||  | ||||||||||||||||||||||||    ||||||| |    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttacca 40203090  T
Q  194 tttaaaggccttaa 207  Q
    ||||||| ||||||    
T  40203089 tttaaagaccttaa 40203076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 5115717 - 5115634
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattt 177  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||  | ||||||| |||||||| ||||    
T  5115717 cactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 28672420 - 28672315
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 171  Q
    |||||||  ||||| |||||||||||||| ||  ||||||||| ||  ||||||||| ||| |||||||||||||| |||| |  |||||||||||||||    
T  28672420 ttgttaatgagtgcatccgagacactctt-aagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacac 28672322  T
Q  172 atatttt 178  Q
    |||||||    
T  28672321 atatttt 28672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 5787554 - 5787434
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 191  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| | ||| ||||||||| |||  | ||||||| ||||||||||||||  ||||||||||     
T  5787554 gacactctttaaggattc-aaaagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattacacatatttttttgataagttat 5787456  T
Q  192 tatttaaaggccttaactagtg 213  Q
      ||||||| | ||||||||||    
T  5787455 attttaaagactttaactagtg 5787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 42850176 - 42850094
Alignment:
Q  126 tttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaac 208  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||| | ||||||| ||||||| |||  ||||||||| ||||||    
T  42850176 tttataaaaaagttaaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaac 42850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 50222688 - 50222611
Alignment:
Q  124 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaagg 201  Q
    ||||||||| ||| ||||||||||  ||| || ||||||||||||||| ||||||||| | || ||||||||||||||    
T  50222688 attttataaaaaaatcaaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaagg 50222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 33744246 - 33744159
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    ||||||||||  ||| ||||| ||  ||||||||| | | ||||||||||||||||||| || |||||||||||||| || |||||||    
T  33744246 cactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcat 33744159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 48947225 - 48947320
Alignment:
Q  120 aattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    ||||||||| ||| || ||||||  |||| |||  | ||||| |||||||||| |||||||| | ||||||| |||||||| ||||||||||||||    
T  48947225 aattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtccttaactagtgcc 48947320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 13954271 - 13954126
Alignment:
Q  69 gtcttgttaaccagtgcctccgag-----acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt 163  Q
    |||||||||||  |||||||||||     ||||||||||| ||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||  | ||||| |    
T  13954271 gtcttgttaacgggtgcctccgaggtggaacactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-t 13954173  T
Q  164 gattacacatattttcatgataagttactatttaaaggccttaacta 210  Q
    ||||||| | |||||||  |||| ||   ||||||||||||||||||    
T  13954172 gattacatacattttcacaataaattttcatttaaaggccttaacta 13954126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 39241512 - 39241430
Alignment:
Q  99 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    ||||| |||| ||||| ||||| ||||||||||| |||   ||||||||  ||| |||||||||||||||||||| |||||||    
T  39241512 tttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacacatgttttcat 39241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 48253319 - 48253375
Alignment:
Q  125 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||||||| |||||||| |||||||||| || || ||||||||| ||||||||||||    
T  48253319 ttttataaaaaagtcaactatttcgattttcaatacattgattatacatattttcat 48253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 44442270 - 44442349
Alignment:
Q  119 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 198  Q
    |||||||| | ||| ||||||||||||||| ||| || || |||| | |||||||||||| || | ||||||||||||||    
T  44442270 aaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttactatttaa 44442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 3338137 - 3338051
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattacacatattttca 180  Q
    |||||||||| |||||||||||| ||||||||| || || ||| | || |||||| ||| || |||||||||||||| | |||||||    
T  3338137 actctttaaacattctaaaagaagaaattatttcataaaaaaaattaagtatttcaattttcaatgcattgattacataaattttca 3338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 5597710 - 5597764
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 147  Q
    |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||    
T  5597710 acactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattt 5597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 27396102 - 27396164
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttata 131  Q
    ||||||||||| ||| || |||||||| |||||||  ||||||||| || |||||||||||||    
T  27396102 gtcttgttaacaagtaccaccgagacattctttaagaattctaaaataagaaattattttata 27396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 50328405 - 50328308
Alignment:
Q  116 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgc 214  Q
    ||||||||||||||||| ||| | |||||||| |||| | ||| | || |||| ||||||||| |||||||||||  ||||||| | ||||| ||||||    
T  50328405 aataaattattttataaaaaatt-aaatattttgatttttgatactttaattatacatatttttatgataagttatcatttaaaagtcttaattagtgc 50328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 14774091 - 14774184
Alignment:
Q  88 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||||| | |||||||  ||||||||| ||| ||||||||  | | ||| ||||||||||||||| || ||||||||| || ||| ||||||||    
T  14774091 ccgagatattctttaagcattctaaaataatcaattatttgtttaaaaaatcaaatatttcgattttcaatgcattgaatatacacattttcat 14774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 28171590 - 28171517
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    |||||||  |||| ||||||| |||||||||||||| ||||| ||||||||| ||| |  ||||||| ||||||    
T  28171590 tctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 15549642 - 15549686
Alignment:
Q  134 aaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    ||||| ||||||||||||| || |||||||||||||||| |||||    
T  15549642 aaagtaaaatatttcgattttcaatgcattgattacacacatttt 15549686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 69 - 215
Target Start/End: Complemental strand, 49446730 - 49446583
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||||||||| ||||||  || | |||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  49446730 gtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgatt 49446631  T
Q  168 acacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49446630 acacatattttcatgataagttactatttaaaggccttaactagtgcc 49446583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 44646661 - 44646522
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| ||| | || ||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  44646661 gtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgatta 44646562  T
Q  169 cacatattttcatgataagttactatttaaaggccttaac 208  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  44646561 cacatattttcatgataagttactattcaaaagccttaac 44646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 44647992 - 44647879
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44647992 cactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagttacta 44647893  T
Q  194 tttaaaggccttaa 207  Q
    || |||||||||||    
T  44647892 ttcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 42197007 - 42197150
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 169  Q
    |||||||||| ||||||| ||  |||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||| ||||||||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattac 42197105  T
Q  170 acatattttcatgataagttactatttaaaggccttaactagtgc 214  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||    
T  42197106 acatatttttatgataaattaccatttaaagactttaactagtgc 42197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 6316942 - 6316821
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||||||| | |||||||||||||||  ||||||| |||| ||||||||| |||| |||| |||| |||| || ||||||||||||    
T  6316942 gtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgatta 6316843  T
Q  169 cacatattttcatgataagtta 190  Q
    ||||||||||||||||||||||    
T  6316842 cacatattttcatgataagtta 6316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 9802732 - 9802621
Alignment:
Q  88 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 187  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||| ||||||||    
T  9802732 ccgagacactctttaaa-attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataag 9802634  T
Q  188 ttactatttaaag 200  Q
    ||| | |||||||    
T  9802633 ttattctttaaag 9802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 20390023 - 20390138
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 196  Q
    |||||||  |||| |||| || |||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||  ||||||||||||||||| ||||    
T  20390023 tctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagttaccattt 20390122  T
Q  197 aaaggccttaactagt 212  Q
    ||| ||||||||||||    
T  20390123 aaaagccttaactagt 20390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 42844030 - 42844145
Alignment:
Q  86 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgata 185  Q
    ||||| ||||||||| |||||||  |||| |  |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42844030 ctccgggacactcttgaaagatttcaaaaaacgaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcataata 42844129  T
Q  186 agttactatttaaagg 201  Q
    | ||||  ||||||||    
T  42844130 aattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 41468080 - 41468200
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    |||||||||  |||| ||||||| ||||||| |||||| ||||| ||||||| |||||   |||||||||||||||  |||||| |||| ||||||| ||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  195 ttaaaggccttaactagtgcc 215  Q
    |||||||||||||||||||||    
T  41468180 ttaaaggccttaactagtgcc 41468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 191  Q
    ||||||| ||||  ||||||| |||||||||||||| ||||| |||||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 44088286 - 44088376
Alignment:
Q  119 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaact 209  Q
    |||||||||||| | ||| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44088286 aaattattttattaaaaaatcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaact 44088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 25196110 - 25196218
Alignment:
Q  73 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 172  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||  | |  |||| ||||||||    
T  25196110 tgttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattttgatttccaagacattaattacaca 25196209  T
Q  173 tattttcat 181  Q
    | |||||||    
T  25196210 tgttttcat 25196218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  111 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 204  Q
    ||||||| |||||||||||||| ||||||||| |||||||||  | ||||||||||||||||||||   |||||||||||| ||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 40480306 - 40480205
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 40480207  T
Q  169 ca 170  Q
    ||    
T  40480206 ca 40480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 12103951 - 12103864
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||  | |  ||||||||||||||||||||||    
T  12103951 cactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 24395308 - 24395194
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatg-cattgattacacatattttcatgataagttac 191  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||| || | | ||||||||||||||||||||||   |||||||    
T  24395308 cactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatt-tctaagacattgattacacatattttcatacaaagttac 24395210  T
Q  192 tatttaaaggccttaa 207  Q
    ||| |||||| |||||    
T  24395209 tatataaaggtcttaa 24395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  110 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 200  Q
    |||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||||| ||||||| |||| || |||| ||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 38494829 - 38494748
Alignment:
Q  134 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||| ||||||| |||  || ||||| ||||||||||||||    
T  38494829 aaaggcaaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaactagtgcc 38494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 28165362 - 28165442
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 148  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||| |||||||||||    
T  28165362 gtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataaaaaaaatcaaatatttc 28165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 39727660 - 39727579
Alignment:
Q  98 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 180  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||   ||||||||||||||| | |||||||    
T  39727660 ctttaaggattctaaaagaataaattattctataa-aaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 50086543 - 50086432
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| ||| || |||||||||| |||| |||| ||  ||||||| | ||| ||| |||||||||| |||| || ||||||||| ||    
T  50086543 gtcttgttaacgagtgcc-ccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  169 cacatattttcat 181  Q
    |||||||||||||    
T  50086444 cacatattttcat 50086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 34235910 - 34235984
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    |||||||| ||| ||||||||||||||||||||| || ||||||||| ||||| ||| || ||||||||||||||    
T  34235910 tctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattaca 34235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 36721657 - 36721591
Alignment:
Q  134 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 200  Q
    ||||||||||||||| |||||| |||||||||||||||| |||| ||| | || |||||||||||||    
T  36721657 aaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 49769219 - 49769110
Alignment:
Q  103 aagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggc 202  Q
    |||||| |||||||| |||| ||||||||| |||||  || ||||  |||   || | |||||||||||||||||| |||||||||||| |||||||||     
T  49769219 aagattttaaaagaagaaataattttataaaaaagttgaaaattttaatttatgacgaattgattacacatatttttatgataagttaccatttaaaggt 49769120  T
Q  203 cttaactagt 212  Q
    ||||| ||||    
T  49769119 cttaagtagt 49769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 31871149 - 31871090
Alignment:
Q  111 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||  ||||||||||||||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 52373181 - 52373050
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||||||||| ||| |||||| |||||||||||| |||| | ||| || ||||||||| || || |||||||||||||   ||| || ||||||  |||    
T  52373181 gtcttgttaacgagtacctccgggacactctttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaatt 52373082  T
Q  168 acacatattttcatgataagttactatttaaa 199  Q
    ||||| |||||||  | || ||||||||||||    
T  52373081 acacaaattttcagaaaaaattactatttaaa 52373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 41370239 - 41370157
Alignment:
Q  134 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 216  Q
    ||||| ||||||||| ||| || |||||||||||||||| |||||||| | || |||||||| |||| ||||||  |||||||    
T  41370239 aaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgcct 41370157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 1696283 - 1696194
Alignment:
Q  110 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaa 199  Q
    |||||||| | ||||||  |||| |||| |||||||||| |||  |||||||||||||||| | |||||||  | |||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaa 1696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 53919863 - 53919936
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||| ||||| |||  |||||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgatt 53919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 27346293 - 27346385
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 186  Q
    |||||||||| |||||||||| || || ||||||||||| ||||||||| |||| ||||   | |||||| |||| ||| ||||| |||||||    
T  27346293 cactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatttctggtgcatttattatacacatttttatgataa 27346385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 5388022 - 5387947
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    |||||| | |||||||| |||||||| |||||||||||  | ||| | ||||||||||||| || |||||||||||    
T  5388022 gacactttataaagattttaaaagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattgatt 5387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 51105918 - 51106020
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    |||||||||| ||||||||| ||  ||||||| | ||| ||||||||||||||  ||| || || ||  |||||| ||||||||||| |  |||||||||    
T  51105918 actctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaatacacggattacgcatattttcataaatagttactat 51106017  T
Q  195 tta 197  Q
    |||    
T  51106018 tta 51106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 27707003 - 27706954
Alignment:
Q  99 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 148  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttc 27706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 27981368 - 27981477
Alignment:
Q  92 gacactctttaaagattct-aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 190  Q
    ||||||||||||| ||| | |||| || |||||| ||||| | ||| | ||||||||| ||| || || |||| ||||||||||||| |||   ||||||    
T  27981368 gacactctttaaaaatttttaaaaaaaaaaattaatttatgaaaaaattaaatatttcaattttcaatacattaattacacatatttacatacaaagtta 27981467  T
Q  191 ctatttaaag 200  Q
    ||||||||||    
T  27981468 ctatttaaag 27981477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 44088211 - 44088272
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat 130  Q
    ||||||||||| ||||||||||   || | |||||| |||||||||||| ||||||||||||    
T  44088211 gtcttgttaacgagtgcctccggagcaatttttaaaaattctaaaagaagaaattattttat 44088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 52650826 - 52650697
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||||||||  |||||||||||| || |||||  || |||||||| | ||  || ||||||  |||| ||| || || || ||||||    
T  52650826 gtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcactgatta 52650727  T
Q  169 cacatattttcatgataagttactatttaa 198  Q
    ||||  ||||||| | || |||||||||||    
T  52650726 cacaatttttcataaaaaattactatttaa 52650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 11875539 - 11875452
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    ||||||||||||| || ||||| || |||||||||||||  ||| | ||||||||  ||| || |||||||||||| ||| ||||||||    
T  11875539 acactctttaaagcttttaaaaaaagaaattattttatacaaaaattaaatattt-aattttcaatgcattgattatacacattttcat 11875452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 23230372 - 23230272
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||| ||||| |||| ||||||||||||||||||  |||| ||||| | ||||||||  || || ||||| |||| |||| ||| || |||||||||||    
T  23230372 gtcttattaacgagtgtctccgagacactctttaagcattccaaaaggagaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatt 23230273  T
Q  168 a 168  Q
    |    
T  23230272 a 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 47560596 - 47560707
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| || |||||||||||||||  |||| |||| ||  ||||||||| ||| ||| |||||| ||| |||| |  || |||||||||    
T  47560596 gtcttgttaacgagtgtcttcgagacactctttaatcattccaaaataagcaattatttt-taaaaaaatcaaatgttttgatttttaatacattgatta 47560694  T
Q  169 cacatattttcat 181  Q
    |||  ||||||||    
T  47560695 cacgcattttcat 47560707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 34758899 - 34759045
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||||||| | |||||||||| ||||| |||||||  ||||||||||||| ||||| ||||||||||| ||  |||||||||||||    
T  34758899 gtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatta 34758998  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    || |||||| |||||||||||||||||||||| ||||||||||||||    
T  34758999 catatatttccatgataagttactatttaaagcccttaactagtgcc 34759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 54912133 - 54911988
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 169  Q
    |||||||||| |||| | ||||  ||||||||||  |||| ||||||||||| |||||||||| ||||| ||||||||| |||   ||||||||||||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattac 54912034  T
Q  170 acatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||    
T  54912033 acatattttcatgataagttgtcatttataggccttaactagtgcc 54911988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 18399271 - 18399149
Alignment:
Q  94 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 192  Q
    |||||||||| ||||| ||||||| |||| ||||| |||| |||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||     
T  18399271 cactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagttacc 18399172  T
Q  193 atttaaaggccttaactagtgcc 215  Q
    ||||||| |||||||||| ||||    
T  18399171 atttaaaagccttaactaatgcc 18399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 30687214 - 30687077
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 169  Q
    |||||||||| |||| ||| |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||| | || |||| | ||||||||||||||    
T  30687214 tcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattac 30687115  T
Q  170 acatattttcatgataagttactatttaaaggccttaa 207  Q
    ||||||||||||||||| |||  |||||||| ||||||    
T  30687114 acatattttcatgataaattatcatttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 27968170 - 27968307
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gatt 167  Q
    ||||||||||| |||||| ||| |||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||| |||| |||| |||||||||| ||||    
T  27968170 gtcttgttaacgagtgcc-ccg-gacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgatt 27968266  T
Q  168 acacatattttcatgataagttactatttaaaggccttaac 208  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27968267 acacatattttcatgataagttaccatttaaaggccttaac 27968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 52340257 - 52340118
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgatt 167  Q
    ||||||||||| ||| | |||||| |||||||||| ||||| ||| ||| |||| ||||||||| |||  ||||| |||||||||  |||||||||||||    
T  52340257 gtcttgttaacgagttc-tccgaggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgatt 52340159  T
Q  168 acacatattttcatgataagttactatttaaaggccttaac 208  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52340158 acacatatttttatgataagttaccatttaaaggccttaac 52340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 38388694 - 38388812
Alignment:
Q  81 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 180  Q
    |||||||||| | |||| ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||  ||||||||||||||||||||| |    
T  38388694 agtgcctccggggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatattttta 38388793  T
Q  181 tgataagttactatttaaa 199  Q
    | | || ||||||||||||    
T  38388794 taaaaatttactatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 28434481 - 28434591
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||  ||| |||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  28434481 gtcttgttaacgagtgctcccgggacactctttaaggattttaagagaataaattatttcataa-aaagtcaaatattttgattttcgatgcattgatta 28434579  T
Q  169 cacatattttca 180  Q
    || | |||||||    
T  28434580 cataaattttca 28434591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 779810 - 779710
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| ||||  | ||||||| ||||    
T  779810 gtcttgttaacgagtgcctcc-agacactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatttgcaatgcattcatta 779712  T
Q  169 ca 170  Q
    ||    
T  779711 ca 779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 38705086 - 38704969
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| ||||   |||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||  ||||||||||||||    
T  38705086 gtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgatta 38704987  T
Q  169 cacatattttcatgataa 186  Q
    |||||||||  |||||||    
T  38704986 cacatatttgtatgataa 38704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 7754871 - 7754772
Alignment:
Q  105 gattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcc 203  Q
    ||||| ||||||| || | ||||||||| ||| |||||  |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7754871 gattccaaaagaagaagtaattttataaaaaaagtcaacgatttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 4033026 - 4033138
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||| ||||| |||||||||| || |||||||||||||| ||| ||||| |||||||||  ||||||| |||||||||| ||||||||||||| ||   |    
T  4033026 cactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttaca 4033124  T
Q  194 tttaaaggccttaa 207  Q
    |||||||| |||||    
T  4033125 tttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 19898191 - 19898100
Alignment:
Q  116 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaa 207  Q
    ||||||||||||||||  ||| ||||||||||| ||| || ||||||||||||||||||||||||| | || |||| || |||||| |||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaa 19898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 55110042 - 55110109
Alignment:
Q  114 agaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||| |||||||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcat 55110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 25548333 - 25548196
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 168  Q
    |||||||||| ||| || |||| ||||||||||| || |||||||||| ||| |||||||||| ||| || ||||||||| |||    ||||||||||||    
T  25548333 tcttgttaacgagtacccccga-acactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgatta 25548235  T
Q  169 cacatattttcatgataagttactatttaaaggccttaa 207  Q
    ||||||||||||| | || |||  ||||||||| |||||    
T  25548234 cacatattttcataaaaatttatcatttaaaggtcttaa 25548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 43749581 - 43749507
Alignment:
Q  98 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 172  Q
    |||||| |||||||||||||||||||||| ||| | ||||||||||||||| ||| || ||  ||||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacaca 43749507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 53433281 - 53433211
Alignment:
Q  110 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 180  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||| ||||||||||||||||| | |||||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 1680566 - 1680511
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 152  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 2831538 - 2831629
Alignment:
Q  90 gagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||||||||||||| ||||| |||  || |||||||||| ||||||||||||||||||| ||| |  ||||| |||||| |||  |||||||    
T  2831538 gagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattttaaatgcaatgattatacaagttttcat 2831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 39976721 - 39976804
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    |||||||| || ||||||||| ||| ||||||||| ||| |||||||||| |||| ||| || || |||||||||||| ||||||    
T  39976721 cactctttgaacattctaaaataatcaattatttt-taaaaaagtcaaatgtttctattttcaatacattgattacacgtatttt 39976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 54955859 - 54955783
Alignment:
Q  114 agaataaattattttata-ataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtt 189  Q
    |||||||||||||||||| | ||| |||||||||| |||| | |||||||  |||||| |||||||||||| |||||    
T  54955859 agaataaattattttatagaaaaaatcaaatattttgatttttgatgcataaattacatatattttcatgaaaagtt 54955783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 11404700 - 11404754
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 147  Q
    ||||||||| ||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  11404700 acactcttttaagattaaaaaaaaataaattattttataaaaaagttaaatattt 11404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 40546348 - 40546398
Alignment:
Q  120 aattattttataataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    ||||||||| ||| |||||||||||||||||||  | ||||||||||||||    
T  40546348 aattattttttaaaaaagtcaaatatttcgatttccaatgcattgattaca 40546398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 9213512 - 9213572
Alignment:
Q  340 aaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatgaatct 401  Q
    ||||||||||||||| |||| ||||| ||||||||||| | |||||||||||| ||| ||||    
T  9213512 aaaatactccctccggtcctatttat-aaaagacattttagtcaacaaaagttgatgtatct 9213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 29497285 - 29497248
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaaga 106  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  29497285 gtcttgttaacgagtgcctccgagacattctttaaaga 29497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 29611990 - 29612035
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaa 114  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||||||    
T  29611990 gtcttgttaacgagtgcccccgggacactctttaaacattctaaaa 29612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 21490682 - 21490626
Alignment:
Q  125 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||| ||| ||||||||||||||| ||| || || ||||||| ||||||||||||||    
T  21490682 ttttgtaaaaaagtcaaatatttcaattttcaattcattgatgacacatattttcat 21490626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 30464056 - 30463992
Alignment:
Q  106 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    |||| ||||||| |||||||| ||||| ||||||||| ||||| ||| |  ||||||||||||||    
T  30464056 attccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 37775411 - 37775371
Alignment:
Q  112 aaagaataaattattttataataaagtcaaatatttcgatt 152  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgatt 37775371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 8247037 - 8247180
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  8247037 gtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatta 8247136  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagt 212  Q
     |||  ||||||||||||||||| |||||||| |||||||||||    
T  8247137 tacaacttttcatgataagttaccatttaaagaccttaactagt 8247180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 3263717 - 3263862
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||| |||| | ||||||||||  |||  ||||||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgc 214  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  3263817 cacatattttaatgataagttaccatttaaagaccttaactagtgc 3263862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 19692696 - 19692840
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattaca 170  Q
    |||||||| |||| | ||| | |||||||||||||||  ||||||| |||||| ||||||| ||| |||||||||||||||| || ||||||||||||||    
T  19692696 ttgttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T
Q  171 catattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||||    
T  19692796 cataatttgatgataagttacaatttaaaggccttaaccagtgcc 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 5356406 - 5356295
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 196  Q
    ||||||| ||| | |||| || |||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5356406 tctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattt 5356307  T
Q  197 aaaggccttaac 208  Q
    |||| |||||||    
T  5356306 aaagaccttaac 5356295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 35395184 - 35395304
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    ||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  195 ttaaaggccttaactagtgcc 215  Q
    | |||||  ||||| ||||||    
T  35395284 taaaaggtgttaacgagtgcc 35395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 10051700 - 10051845
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| | |  || |||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||  ||||||||||||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgatta 10051799  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgc 214  Q
     |||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  10051800 tacaacttttcataataagttaccatttaaaggtcttaactagtgc 10051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 28793305 - 28793446
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||| ||||   | |||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||| ||||    
T  28793305 gtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaatta 28793404  T
Q  169 cacatattttcatgataagttactatttaaaggccttaacta 210  Q
    || ||||||| ||||||| |||| |||||||  |||||||||    
T  28793405 catatatttttatgataatttaccatttaaataccttaacta 28793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 1354481 - 1354345
Alignment:
Q  71 cttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||| |||||||||||||    ||  |||||||| |    
T  1354481 cttgttaacaagtgcctccgagacactcttaaga-attctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattata 1354383  T
Q  171 catattttcatgataagttactatttaaaggccttaac 208  Q
     ||||||||||||||| ||||  |||||||||||||||    
T  1354382 tatattttcatgataatttaccttttaaaggccttaac 1354345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 22473432 - 22473551
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatt 195  Q
    ||||||| ||||  ||||||| |||||||||||||| |||  ||||||||||  |||   ||||||||||||||||||||||||| |||||||||| |||    
T  22473432 tctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagttaccatt 22473531  T
Q  196 taaaggccttaactagtgcc 215  Q
    ||||| ||||||||||||||    
T  22473532 taaagcccttaactagtgcc 22473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 21582367 - 21582463
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 190  Q
    |||| ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||   ||| || |||| ||||| |||||||||||||||||    
T  21582367 cactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagtta 21582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 14042440 - 14042542
Alignment:
Q  76 taaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatat 175  Q
    |||| |||| ||||| || |||||||||||||||||||| ||||||||||| | ||| |||||||||||||| ||||  | |||||||||||| ||| ||    
T  14042440 taacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattatacaaat 14042539  T
Q  176 ttt 178  Q
    |||    
T  14042540 ttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 31889611 - 31889709
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 192  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||| || ||||||||| |||    ||||||||||||||||||||||||| | ||||||||    
T  31889611 actctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 4725979 - 4725897
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 152  Q
    ||||||||||| |||| | |||| ||||| ||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  4725979 gtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaattattttataa-aaagtcaaagatttcgatt 4725897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 142436 - 142350
Alignment:
Q  124 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaacta 210  Q
    ||||||||| ||| ||||||||||| |||   ||| ||||||||||||||| ||| ||||||||||||  |||||||| ||||||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaacta 142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 22871913 - 22871967
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatt 146  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  22871913 gacactctttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 3758194 - 3758279
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    |||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||||||||||||| || ||||||||| || |||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattgaatatacatttttt 3758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 26663642 - 26663714
Alignment:
Q  106 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 26935237 - 26935309
Alignment:
Q  106 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 14475133 - 14474998
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 171  Q
    |||||||| ||||| |||| | | ||||| ||  ||| |||||||| |||||||| ||||| || |||||||||||| |||   ||||| |||||||||     
T  14475133 ttgttaacaagtgcttccggggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacat 14475034  T
Q  172 atattttcatgataagttactatttaaaggccttaa 207  Q
    | |||||||  | |||||||||||| |||| |||||    
T  14475033 aaattttcaaaaaaagttactatttgaaggtcttaa 14474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 27650944 - 27650866
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 147  Q
    ||||||||||| ||| ||||||  |||||||||||| |||| |||| || |||||||| ||||| ||||| ||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattt 27650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 37976444 - 37976497
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 148  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttc 37976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 12933327 - 12933381
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 147  Q
    |||||||| || ||||  |||| ||||||||||||||||| ||||||||||||||    
T  12933327 acactcttcaacgatttcaaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 24241256 - 24241210
Alignment:
Q  106 attctaaaagaataaattattttataataaagtcaaatatttcgatt 152  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatt 24241210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 24241096 - 24241039
Alignment:
Q  121 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    |||||||||||| ||||||||||||||| ||| |  || ||||||||| |||||||||    
T  24241096 attattttataaaaaagtcaaatatttcaatttttaatacattgattatacatatttt 24241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 43145883 - 43145943
Alignment:
Q  156 gatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 216  Q
    ||||||||||||||| | |||||||  | || |||||||||||||| ||||| ||||||||    
T  43145883 gatgcattgattacataaattttcaaaaaaaattactatttaaaggtcttaaatagtgcct 43145943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 8789826 - 8789973
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||| | | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  8789826 gtcttgttaacgagtactttcgggacactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgatta 8789925  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcct 216  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||||||    
T  8789926 cacatattttcatgttaagttaccctttaaagaccttaaccagtgcct 8789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 44941216 - 44941072
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||| ||| ||| |||||| ||||| ||| |||||||||  ||||||||||||||    
T  44941216 gtcttgttaacgagtgcc-ctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgatta 44941118  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgc 214  Q
    || |||||||| |||||| |||| ||||||||||||||||||||||    
T  44941117 catatattttcctgataaattaccatttaaaggccttaactagtgc 44941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 20683133 - 20682990
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||  ||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20683133 gtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgatta 20683034  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagt 212  Q
    |||||||||| |||||||||||| || ||||  | |||||||||    
T  20683033 cacatatttttatgataagttaccatataaaaactttaactagt 20682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 8773784 - 8773670
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||||||| ||||||||      
T  8773784 cactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagttaccc 8773685  T
Q  194 tttaaaggccttaac 208  Q
    ||||||| |||||||    
T  8773684 tttaaagaccttaac 8773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 4238438 - 4238341
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 190  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4238438 gacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagtta 4238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 18053130 - 18053008
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 191  Q
    |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||    
T  18053130 gacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattac 18053031  T
Q  192 tatttaaaggccttaactagtgcc 215  Q
      ||||||||||||||||| ||||    
T  18053030 -ctttaaaggccttaactaatgcc 18053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 42945125 - 42945012
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||| ||||| |||| |||||||| | |||||||||| | ||| |||||||||||||||  |  ||||||||||||||||||||| ||||||| ||||||    
T  42945125 cactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttacta 42945026  T
Q  194 tttaaaggccttaa 207  Q
    ||||||||||||||    
T  42945025 tttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 6761862 - 6761751
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||| |||||| ||||||||||  |||| |||||||||||| ||| ||||| ||||||||||||||| |||  | ||||||||||||    
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  169 cacatattttca 180  Q
    || | |||||||    
T  6761762 cataaattttca 6761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 2393148 - 2393038
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 196  Q
    ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |  |||||||| ||||| |||||||   |||||||||| |    
T  2393148 tctttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattttgattctcaagacattgatttcacatgttttcatacaaagttactatat 2393049  T
Q  197 aaaggccttaa 207  Q
    ||||| |||||    
T  2393048 aaaggtcttaa 2393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 34546379 - 34546265
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||| |||||||   ||||||||||||||||| |||||||||||||||||  |    
T  34546379 cactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatca 34546280  T
Q  194 tttaaaggccttaac 208  Q
    ||||| || ||||||    
T  34546279 tttaatggtcttaac 34546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 42966938 - 42967066
Alignment:
Q  81 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttc 179  Q
    |||||||||||||||||||||||  || ||||||||| ||||||||| |||| ||| || ||||||||| |||| |||||||||||||||| | ||||||    
T  42966938 agtgcctccgagacactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttc 42967037  T
Q  180 atgataag-ttactatttaaaggccttaa 207  Q
    |  | ||  |||||||||||||| |||||    
T  42967038 aaaaaaaaattactatttaaaggtcttaa 42967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 1070568 - 1070639
Alignment:
Q  107 ttctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttc 179  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattttgattttcaatg-attgattacacatattttc 1070639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 5962101 - 5961954
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa-taaattattttat-aataaagtcaaatatttcgattctcgatgcattgat 166  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||| ||||  || || ||| | ||||||||| |||  | ||||||||||    
T  5962101 gtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgat 5962002  T
Q  167 tacacatattttcatgataagttactatttaaaggccttaactagtgc 214  Q
    |||| | |||||||  |  |||||||||||||||| ||||| ||||||    
T  5962001 tacataaattttcaaaaacagttactatttaaaggtcttaaatagtgc 5961954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 10069229 - 10069312
Alignment:
Q  367 aaaagacatttaaatcaacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatattt 450  Q
    ||||||||||| | |||| ||||||| ||| |||| |||||| ||||||||||||| ||||||| |||||| ||||||||||||    
T  10069229 aaaagacatttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaaatattt 10069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 3882586 - 3882700
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||||  || | ||||||||||  ||||||||| ||  ||||||| | ||| || ||||||||||||| || || ||||||||||||    
T  3882586 gtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatta 3882685  T
Q  169 cacatattttcatga 183  Q
    |||| ||||||||||    
T  3882686 cacacattttcatga 3882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 433643 - 433551
Alignment:
Q  72 ttgttaaccagtgcctccgag-acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 164  Q
    |||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||| | |||||||||    
T  433643 ttgttaacgagtgcc-ccgaggacactctttaaggattccaaaagaataaattaatttataaaaaagttaaatattttgatttttgatgcattg 433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 8898913 - 8898861
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatat 145  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  8898913 acaccctttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 18227092 - 18227204
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| |||||  |||||||||||| ||| ||||| ||  ||||||| |  |  ||||||||||||||||||| || ||||||||||||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgatta 18227191  T
Q  169 cacatattttcat 181  Q
     | | ||||||||    
T  18227192 aatacattttcat 18227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 2826066 - 2825983
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    |||||||||  || |||||| || |||||||||| ||| ||||| |||||||||||||  | |||||||||||||||| |||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttt 2825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 13442703 - 13442636
Alignment:
Q  81 agtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 148  Q
    |||||||||||   ||||||||||||||| |||||||||||||||||||| || ||||| |||||||||    
T  13442703 agtgcctccgaagtactctttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttc 13442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 35228732 - 35228816
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||  |||||||||||||||    ||||||| |||||||||||||||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcat 35228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 3199599 - 3199541
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 152  Q
    ||||||||||  ||||||||| || |||||||||||||| ||| |||||||||| ||||    
T  3199599 cactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 7271769 - 7271880
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaa----gtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 187  Q
    |||||||||||| |||||||||| || ||| ||| |||||| |||    |||||||||||  |||  | |||||||||||||| |||||||||| | |||    
T  7271769 gacactctttaaggattctaaaaaaagaaactatcttataaaaaaaaaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaag 7271868  T
Q  188 ttactatttaaa 199  Q
    |||  |||||||    
T  7271869 ttatcatttaaa 7271880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 14102435 - 14102297
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 168  Q
    |||||||||| ||||||||||   ||||||||||| || | |||| || ||||||||| | || ||| || |||||||||||||  | || |||||||||    
T  14102435 tcttgttaacgagtgcctccggagcactctttaaacatgccaaaataagaaattatttaaaaaaaaaagttaaatatttcgatttccaatacattgatta 14102336  T
Q  169 cacatattttcatgataagttactatttaaaggccttaa 207  Q
    ||||  ||||||| |  |||||||| ||| || ||||||    
T  14102335 cacactttttcataaatagttactacttatagtccttaa 14102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 31448400 - 31448315
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    ||||||||||||||||   |||||| |||||||||||||| ||| | ||| |||| ||||  |||| |||| ||||| ||||||||    
T  31448400 acactctttaaagatttctaaagaagaaattattttataaaaaatttaaaaattttgatttccgatacattaattactcatatttt 31448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 45212057 - 45212110
Alignment:
Q  99 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 152  Q
    ||||| ||||||||||  |||||||||||||||| ||| |||||||||| ||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattttgatt 45212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 33276005 - 33275918
Alignment:
Q  93 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||||||||||  ||||||||| || |||||||||| ||| ||||| ||||||||| ||| || || ||| || |||||| ||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaatacataga-tacacacattttcat 33275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 30413030 - 30412910
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    ||||||||| ||||  ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  195 ttaaaggccttaactagtgcc 215  Q
    |||||||||||||| ||||||    
T  30412930 ttaaaggccttaaccagtgcc 30412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 8170001 - 8170147
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||| |  |||  ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||  |||| |||||||||    
T  8170001 gtcttgttaacaagtactcccggaacactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatta 8170100  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
     |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  8170101 tacatatgttcatgataagttactttttaaagaccttaactagtgcc 8170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 48137789 - 48137899
Alignment:
Q  105 gattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 204  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||| || |    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaaagcat 48137888  T
Q  205 taactagtgcc 215  Q
    |||||||||||    
T  48137889 taactagtgcc 48137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 42493703 - 42493798
Alignment:
Q  94 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagt 188  Q
    |||||||||| ||||| ||||||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42493703 cactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 47507580 - 47507711
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| ||||| | |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| ||||| |||  ||||| ||||||||    
T  47507580 gtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgatta 47507679  T
Q  169 cacatattttcatgataagttactatttaaag 200  Q
    ||||| ||||||||| ||||||| ||||||||    
T  47507680 cacattttttcatgagaagttaccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 38452146 - 38452283
Alignment:
Q  73 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 172  Q
    ||||||| |||||| |||| ||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||| |||  |||||||||| |||||||    
T  38452146 tgttaacgagtgcccccga-acattctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T
Q  173 tattttcatgataagttactatttaaaggccttaactag 211  Q
    ||||||||| |||| |||   ||||||||||||||||||    
T  38452245 tattttcataataaattatcttttaaaggccttaactag 38452283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  99 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 196  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 16878677 - 16878809
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    |||||||||||  |||  |||| |||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  16878677 gtcttgttaacaggtgtttccgggacactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgatta 16878776  T
Q  169 cacatattttcatgataagttactatttaaagg 201  Q
    || ||||||| |||  |||||||||||||||||    
T  16878777 caaatatttttatgcaaagttactatttaaagg 16878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 44391537 - 44391426
Alignment:
Q  96 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  44391537 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 44391439  T
Q  195 ttaaaggccttaa 207  Q
    ||||||| |||||    
T  44391438 ttaaaggtcttaa 44391426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 46684626 - 46684550
Alignment:
Q  135 aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactag 211  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  46684626 aagtcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaactag 46684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 5248088 - 5248179
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatga 183  Q
    |||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  5248088 gacattctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 2741168 - 2741260
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 186  Q
    |||||||||| |||| |||||||| |||||||||||| | ||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||    
T  2741168 cactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 15034911 - 15034793
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gattacacatattttcatgataagtta 190  Q
    |||||||||||| ||||| || | || ||| |||||||||| ||||||||||||||||||   | ||||||| |||||||| ||||||||| ||||||||    
T  15034911 gacactctttaaggattccaagaaaagaaaatattttataa-aaagtcaaatatttcgatatccaatgcatttgattacacgtattttcataataagtta 15034813  T
Q  191 ctatttaaaggccttaacta 210  Q
    |  |||||||||||||||||    
T  15034812 ccttttaaaggccttaacta 15034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 43670409 - 43670517
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 196  Q
    |||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| |||| |||||||| |||||||| || |||| ||||||| |||| ||||    
T  43670409 tctttaaagattttaaatgaagaaataattttataaaaaaatcaaagattttgattttcgatgcactgattacatatgtttttatgataaattaccattt 43670508  T
Q  197 aaaggcctt 205  Q
    |||| ||||    
T  43670509 aaagacctt 43670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 47305592 - 47305516
Alignment:
Q  140 aaatatttcga-ttctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    ||||||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaacaccttaactagtgcc 47305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 676488 - 676400
Alignment:
Q  89 cgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    |||||||||||||||| ||||||||| ||  ||||||||  ||| ||||| ||||||||||||| |  ||||||||||||||||||||||    
T  676488 cgagacactctttaaacattctaaaataagtaattatttattaa-aaagttaaatatttcgattttaaatgcattgattacacatatttt 676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 37352535 - 37352436
Alignment:
Q  81 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 180  Q
    ||||||||||||||| ||||||| ||||| |||| || ||||||||  || | ||||||||||||||| |||  | ||||||| |||||||| |||||||    
T  37352535 agtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 33887971 - 33887887
Alignment:
Q  86 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 170  Q
    ||||||||||||||||||  |||| |||| ||  ||||||| | ||| ||||||||||||||| ||| || ||||||||||||||    
T  33887971 ctccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 36015141 - 36015002
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| | || ||||| |||| ||||||| ||||  |||| || |||||||||||||| ||| |||||||| || ||| || ||  ||||||||    
T  36015141 gtcttgttaacgaatgtctccgggacattctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgatta 36015042  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtg 213  Q
    ||| ||||||     ||||||||  ||||||| ||||||||||||    
T  36015041 cacgtatttt-----taagttaccttttaaagaccttaactagtg 36015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 36285887 - 36285774
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||| ||| |||||||| |||  ||||||||| |||  |||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||      
T  36285887 actctttaaaaattttaaaagaagaaagcattttataaaaaaaatcaaatattttgatttccgatacattgattaca--tatttttatgataagttacat 36285790  T
Q  194 tttaaaggccttaact 209  Q
    |||||||| |||||||    
T  36285789 tttaaaggacttaact 36285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 45375483 - 45375399
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 152  Q
    ||||| ||||| |||||||||| | |||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  45375483 gtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaacttatgttataaaaaagttaaatattttgatt 45375399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 15995924 - 15995971
Alignment:
Q  134 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  15995924 aaagttaaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 35754017 - 35754126
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 171  Q
    |||| ||| |||| ||| || |||||||||||  |||  |||| || |||||||||||||| | | |||| |||||||||| || ||||||| |||||||    
T  35754017 ttgtcaacgagtgtctctgaaacactctttaagaatttcaaaaaaagaaattattttataaaataatcaagtatttcgattttcaatgcattaattacac 35754116  T
Q  172 atattttcat 181  Q
    || |||||||    
T  35754117 atgttttcat 35754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 44495238 - 44495314
Alignment:
Q  121 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattta 197  Q
    |||||||||||| ||| | ||||||||||||| |  || ||||||||||||||||||| || | |||||| ||||||    
T  44495238 attattttataaaaaatttaaatatttcgatttttaattcattgattacacatatttttataacaagttattattta 44495314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 14574768 - 14574815
Alignment:
Q  134 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    ||||| ||||| ||||||| || |||||||||||||||||||||||||    
T  14574768 aaagttaaatacttcgattttcaatgcattgattacacatattttcat 14574815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 35599944 - 35599837
Alignment:
Q  63 ttaattgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcat 162  Q
    ||||| ||||||||||| ||||||||||||| |||||||||| || |||||  |  |||||||| | ||| ||| ||||||| ||| | | || ||||||    
T  35599944 ttaatggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcat 35599845  T
Q  163 tgattaca 170  Q
    ||| ||||    
T  35599844 tgaataca 35599837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 31477085 - 31477175
Alignment:
Q  92 gacactctttaaagattctaaaagaat-aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 181  Q
    |||||| ||||| |||||||||| ||  |||||||| ||||| || |||||| |  | |||| || |||||||||||||||||||||||||    
T  31477085 gacactatttaaggattctaaaaaaaagaaattattgtataaaaacgtcaaaaaaattgattttcaatgcattgattacacatattttcat 31477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 10032058 - 10031945
Alignment:
Q  68 tgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||| |||||| |||||| ||| ||||||||||||  |||| ||||  |  ||||||||| | | ||||| |||| ||||||||  | |||||||||||    
T  10032058 tgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatt 10031959  T
Q  168 acacatattttcat 181  Q
    |||||  |||||||    
T  10031958 acacactttttcat 10031945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 25120271 - 25120218
Alignment:
Q  91 agacactctttaaagattctaaaagaataaattattttataataaagtcaaata 144  Q
    ||||||||||||||||||  |||  ||||||||||||| ||| |||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtcaaata 25120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 27359398 - 27359466
Alignment:
Q  140 aaatatttcgattctcgatgcattgattacacatattttcat-gataagttactatttaaaggccttaa 207  Q
    |||||||||||||  | ||||||||||||||| | |||||||  | ||||||||||||||||| |||||    
T  27359398 aaatatttcgatttccaatgcattgattacacttgttttcataaaaaagttactatttaaaggtcttaa 27359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 31206280 - 31206426
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||| ||  ||||  ||||||||| ||||| ||||| | |||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  31206280 gtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatta 31206379  T
Q  169 cacatattttcatgataagttactatttaaaggccttaactagtgcc 215  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  31206380 cacatatttttatgataaattactatttaaaggccttaactaatgcc 31206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 38956884 - 38956992
Alignment:
Q  99 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 198  Q
    ||||| ||||||||||||   ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  199 aggccttaa 207  Q
    || ||||||    
T  38956984 agaccttaa 38956992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 5217869 - 5217747
Alignment:
Q  92 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 191  Q
    |||||||||||| ||||| ||||  |||||| ||||||||| |||||||||||||||||||  ||||| |||||||||||||||||| ||||||| ||||    
T  5217869 gacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgatgtattgattacacatatttttatgataaattac 5217772  T
Q  192 tatttaaaggccttaactagtgcct 216  Q
     || |||||  ||||||||||||||    
T  5217771 catataaagatcttaactagtgcct 5217747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 45368834 - 45368729
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||||||||||||||||||||| |    
T  45368834 cactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagttacca 45368735  T
Q  194 tttaaa 199  Q
    ||||||    
T  45368734 tttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 5020162 - 5020051
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |||| ||||||||||||  |||||||||| ||||||| ||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacac--attttcatgacaagttaccat 5020065  T
Q  195 ttaaaggccttaac 208  Q
    ||||||||||||||    
T  5020064 ttaaaggccttaac 5020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 20169827 - 20169716
Alignment:
Q  96 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 194  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  20169827 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 20169729  T
Q  195 ttaaaggccttaa 207  Q
    ||||||| |||||    
T  20169728 ttaaaggtcttaa 20169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 9632898 - 9633040
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa--taaattattttataataaagtcaaatatttcgattctcgatgcattgat 166  Q
    ||||||||||| |||| ||||| | |||||||||||||||  |||| ||  ||||  ||| || || |||||||||||||| ||||   |||||||||||    
T  9632898 gtcttgttaacaagtgtctccgggtcactctttaaagatttcaaaaaaaaataaaaaattataaaa-aaagtcaaatattttgatttcagatgcattgat 9632996  T
Q  167 tacacatattttcatgataagttactatttaaaggccttaacta 210  Q
    ||||||||||||||| |||| || | |||||||| |||||||||    
T  9632997 tacacatattttcataataaattgccatttaaagaccttaacta 9633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 33636685 - 33636767
Alignment:
Q  66 attgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 148  Q
    |||||||| ||||| |||||  ||||||||||||||||  |||||||||| | ||||||||| |||| |||||||||| ||||    
T  33636685 attgtcttattaacgagtgcgcccgagacactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttc 33636767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 171  Q
    |||||||| ||||||  |||||||||||||||  |||| | |  || |||||||| | ||| ||||||||||| ||| ||| || ||||||||| |||||    
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  172 atattttcatgataagttactatttaa 198  Q
    | |||||||| | || |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 7044442 - 7044329
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    |||||||||| ||||||||||||| |||||| ||||| | ||||||||| ||||||||| |  | || |||||||||| | |||||||   |||||| ||    
T  7044442 cactctttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgatttttaaggctttgattacacgtgttttcatacaaagttatta 7044343  T
Q  194 tttaaaggccttaa 207  Q
    | |||||| |||||    
T  7044342 tataaaggtcttaa 7044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 24103187 - 24103087
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    |||| |||||| | ||| |||||||||||||||||  ||||||||| || |||||||||| | | || ||||||| ||||||||  ||||||| ||||||    
T  24103187 gtctcgttaacgattgcttccgagacactctttaagcattctaaaataagaaattatttttttaaaaggtcaaatgtttcgatttccgatgcaatgatta 24103088  T
Q  169 c 169  Q
    |    
T  24103087 c 24103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 39932813 - 39932721
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 161  Q
    ||||||||||| | | ||||||| |||||||||||| ||||||||||||  ||| |||  |||| ||||||||||||||| ||| || |||||    
T  39932813 gtcttgttaacgaattcctccgaaacactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 10335159 - 10335020
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 167  Q
    ||||||||||| ||||| | ||   ||||||||||  |||| |||||||||||||||| ||| || |||||||||||||   ||| || ||||||| |||    
T  10335159 gtcttgttaacgagtgcattcggagcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaatt 10335060  T
Q  168 acacatattttcatgataagttactatttaaaggccttaa 207  Q
    | ||| |||||||  | || |||| |||||||||||||||    
T  10335059 atacaaattttcacaaaaaattacaatttaaaggccttaa 10335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 36819793 - 36819755
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataa 132  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36819793 cactctttaaagattctaaaagaaaaaattattttataa 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 37564468 - 37564393
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaata 144  Q
    ||||||||||| |||||||| | ||||||||||||| || |||||  || |||||||| | ||| |||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaata 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 2124203 - 2124141
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataa 132  Q
    |||||||||| ||||   |||||||| |||||||| |||||||||||| |||||||| |||||    
T  2124203 tcttgttaacgagtgttcccgagacattctttaaacattctaaaagaagaaattattctataa 2124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 5968437 - 5968377
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattatttta 129  Q
    ||||||||||| |||||||||  | ||||||||||| ||||||||| ||  ||||||||||    
T  5968437 gtcttgttaacgagtgcctccagggcactctttaaacattctaaaacaagcaattatttta 5968377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 22209376 - 22209488
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||| ||||| |||| ||||| ||||||||||||  ||| ||||||||  |||||||   ||| ||||| |||||||| ||||  | |  |||||||||    
T  22209376 gtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatta 22209475  T
Q  169 cacatattttcat 181  Q
    || ||||||||||    
T  22209476 catatattttcat 22209488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 12383129 - 12383008
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    ||||||||||  |||  ||||| | |||||||||||||| ||||| |||||||| ||||  |||||||||||||| ||||||||| ||||||| ||||||    
T  12383129 cactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaattacta 12383030  T
Q  194 tttaaaggccttaactagtgcc 215  Q
    |||||||| |||||||||||||    
T  12383029 tttaaaggacttaactagtgcc 12383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 16442075 - 16442188
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| || |   ||||||||||||| |||||||   |||||||||    
T  16442075 cactctttaaagattctaaaagaataaattagtttataaaaaagtcaaacattttgattttcaaaatattgattacacatgttttcatacaaagttacta 16442174  T
Q  194 tttaaaggccttaa 207  Q
    | |||||| |||||    
T  16442175 tataaaggtcttaa 16442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 8176324 - 8176419
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 192  Q
    ||||||| ||||||||||||| |||| | ||| ||| ||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttact 8176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 12307821 - 12307904
Alignment:
Q  95 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    ||||||||| ||||  ||||||| |||||||||||||| ||||||||||||||  ||| || || |||| ||||||||||||||    
T  12307821 actctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacacatatttt 12307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 31702874 - 31702747
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| ||||  |||| | ||||||||||  |||  ||||||| |||||||||||||| ||||| || |||||  |||    ||||||||||||    
T  31702874 gtcttgttaacgagtg--tccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgatta 31702777  T
Q  169 cacatattttcatgataagttactatttaa 198  Q
    |||||||||| || | ||||||||||||||    
T  31702776 cacatatttttataaaaagttactatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 7465451 - 7465558
Alignment:
Q  72 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 171  Q
    |||||||| |||||| ||| | |||| ||||| |||||| |||||| ||||| ||  |||| ||||||||||||||| |||  ||||||||||||||||     
T  7465451 ttgttaacgagtgcccccggg-cactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacat 7465549  T
Q  172 atattttca 180  Q
    | |||||||    
T  7465550 aaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 22695549 - 22695473
Alignment:
Q  138 tcaaatatttcgattctcgatgcattgattacacata-ttttcatgataagttactatttaaaggccttaactagtg 213  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| || | ||||||| ||||||| |||||||| ||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaacgagtg 22695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 22696071 - 22696000
Alignment:
Q  70 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaa 141  Q
    |||||||||| |||||||| ||  |||||||||| ||||| ||||||| |||||||||||||| ||| ||||    
T  22696071 tcttgttaacgagtgcctctgatgcactctttaaggattccaaaagaagaaattattttataaaaaaatcaa 22696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 35241410 - 35241509
Alignment:
Q  98 ctttaaagattctaaaagaataaattattttataata-aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 196  Q
    |||||| |||| ||||| || |||||||||||||| | || | |||||||| ||||   ||||||||||||| ||||||||| |||||||||||| ||||    
T  35241410 ctttaaggattttaaaaaaagaaattattttataaaagaaattaaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 6048381 - 6048268
Alignment:
Q  94 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 193  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||| ||| ||||  |||  | |   ||||||||||||| |||||||   |||||||||    
T  6048381 cactctttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattttaatttccaagatattgattacacatgttttcatacaaagttacta 6048282  T
Q  194 tttaaaggccttaa 207  Q
    | |||||| |||||    
T  6048281 tataaaggtcttaa 6048268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 32045211 - 32045160
Alignment:
Q  344 tactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatg 396  Q
    |||||||||||||||| ||||||||| || |||||| ||||||||||||||||    
T  32045211 tactccctccgatcctatttataaaa-gatatttaactcaacaaaagttaatg 32045160  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 26311807 - 26311889
Alignment:
Q  97 tctttaaagattctaaaagaataaattattttataataa-agtcaaatatttcgattctcgatgcattgattacacatatttt 178  Q
    ||||||| |||||| ||||||||||||| ||||||| ||  || |||||||| |||| || || |||| ||||||||||||||    
T  26311807 tctttaaggattctgaaagaataaattaatttataaaaatggttaaatattttgattttcaatacattaattacacatatttt 26311889  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 30509286 - 30509387
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||||||| |||| |||||  |||||||||||  || | |||| ||  ||||||| | ||| ||| ||||| ||||||||| || ||||||||||||    
T  30509286 gtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatta 30509385  T
Q  169 ca 170  Q
    ||    
T  30509386 ca 30509387  T

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Target: scaffold0246 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 18245 - 18144
Alignment:
Q  69 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 168  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 18146  T
Q  169 ca 170  Q
    ||    
T  18145 ca 18144  T

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