View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7242_high_2 (Length: 408)
Name: NF7242_high_2
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 42021538 - 42021142
Alignment:
| Q |
1 |
catatattaccccacattccacaaatgacttcaaaatgctccatgttactttacttttctcattcattcattgacctccaaaaagcatgggatactatgt |
100 |
Q |
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| T |
42021538 |
catatattaccccacattccacaaatgacttcaaaatgctccatgttactttacttttctcattcattcattgacctccaaaaagcatgggatactatgt |
42021439 |
T |
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| Q |
101 |
taattgttaagaaagcaataatatttcattcctttagcttcaacatgttaacatgctcgactctttgcccgtgcatcacaggctttttatgagacaaatc |
200 |
Q |
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| T |
42021438 |
taattgttaagaaagcaataatatttcattcctttagcttcaacatgttaacatgctcgactctttgcccgtgcatcacaggctttttatgagacaaatc |
42021339 |
T |
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| Q |
201 |
acgtgcatataaaaagtagagaccacaaatcaattattaattttctgttcaactatatatgtacatgaatcgtggtcactaactctagtcattcacgtag |
300 |
Q |
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| T |
42021338 |
acgtgcatataaaaagaagagaccacaaatcaattattaattttctgttcaactatatatgtacatgaatcgtggtcactaactctagtcattcacgtag |
42021239 |
T |
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| Q |
301 |
gatccgtcaagctaagtaattatgttacagtttttaaagaaaatcaaaatctagttgagttttggtccttccgatcttaatcggatggtcacaggtt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
42021238 |
gatccgtcaagctaagtaattatgttacagtttttaaagaaaatcaaaatctagttgagttttggtccttccaatcttaatcgaatggtcacaggtt |
42021142 |
T |
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