View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7242_high_4 (Length: 346)
Name: NF7242_high_4
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 98 - 330
Target Start/End: Complemental strand, 4725984 - 4725753
Alignment:
| Q |
98 |
atctaagttacttcttgttagtatctaagttgcgcagattgatatatgatttacatnnnnnnngaaattcatatataattgttgtgtatgtgactcaaaa |
197 |
Q |
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| T |
4725984 |
atctaagttacttcttgttagtatctaagttgcgcagattgatatatgatttacataaaaaaagaaattcatatataattgttgtgtatgtgactcaaaa |
4725885 |
T |
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| Q |
198 |
tcttgaatatcaaattattaattacttaatctcttctctc--nnnnnnnnnttacttaatcacnnnnnnnaaaaattgtcacgccaagcatctggctaaa |
295 |
Q |
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| T |
4725884 |
tcttgaaaatcaaattattaattacttaatctcttctctcaaaaaaaaaaagtacttaatcactttttttaaaaattgtcacgccaagcatctggctaaa |
4725785 |
T |
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| Q |
296 |
cattagtctactagtatatcataaggtgggaactg |
330 |
Q |
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| T |
4725784 |
cattagtctac---tatatcataaggtgggaactg |
4725753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 4726116 - 4726005
Alignment:
| Q |
6 |
gtttggagttgatgcgtatgaaaaaataattgtgaagaaatatcaatctttgaaatagatctaagttacttctttgtcnnnnnnnta-aataaatctaag |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
4726116 |
gtttgaagttgatgcgtatgaaaaaataattgtgaagaaatatcgatctttgaaatagatctaagttacttctttgtcaaaaaaatacaataaatctaag |
4726017 |
T |
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| Q |
105 |
ttacttcttgtt |
116 |
Q |
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|||||||||||| |
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| T |
4726016 |
ttacttcttgtt |
4726005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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