View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7242_low_1 (Length: 664)
Name: NF7242_low_1
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Complemental strand, 4236846 - 4236193
Alignment:
| Q |
1 |
aagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaaggattattcaaggtatggcggct |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236846 |
aagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaaggattattcaaggtatggcggct |
4236747 |
T |
|
| Q |
101 |
agtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236746 |
agtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtt |
4236647 |
T |
|
| Q |
201 |
taacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgctggtgtgaatgtcaaaatgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236646 |
taacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgctggtgtgaatgtcaaaatgat |
4236547 |
T |
|
| Q |
301 |
tacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagtctatatgaatacgaagaagataataaga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | || ||| ||||||||| |
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|
| T |
4236546 |
tacaggtattactaaaatatcttatttatcgataacttgataatataaaattctctatttatacatacgagcctatatggaaatgatgaatataataaga |
4236447 |
T |
|
| Q |
401 |
a---------taactaattcttaattgactattaactaactttatctctgatgacaggtgataatgttttcactgcaaaagctatagcatttgaatgcgg |
491 |
Q |
| |
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| |||||| || |||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
4236446 |
atagttaacctaactagttgttaattaaccattaacatactttatctctgatgacaggtgacaatgttttcactgcaaaagctatagcatttgaatgtgg |
4236347 |
T |
|
| Q |
492 |
aattcttcaaccaaatcaggacacagatgaaacagtggttgaaggtgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaata |
591 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236346 |
aattcttcaacctaatcaggacacggatgaaacagtggttgaaggcgaacaatttcgtaacttcacacacgaagagaggttggcgaaagttgagaaaatc |
4236247 |
T |
|
| Q |
592 |
tctgtgatggcaaggtcttctccttttgataaacttctaatggtacaatgctta |
645 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4236246 |
tctgtgatggcaagatcttctccatttgataaacttctaatggtacaatgctta |
4236193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 37067887 - 37067926
Alignment:
| Q |
302 |
acaggtattactaaaatatcttatttatcgataacttgat |
341 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
37067887 |
acaggtattactaaaatatctcatttattgataacttgat |
37067926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 37060411 - 37060449
Alignment:
| Q |
302 |
acaggtattactaaaatatcttatttatcgataacttga |
340 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
37060411 |
acaggtattactaaaatatctcatttattgataacttga |
37060449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 6185939 - 6185611
Alignment:
| Q |
1 |
aagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaaggattattcaaggtatggcggct |
100 |
Q |
| |
|
||||||||| |||| |||| ||||| ||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||| ||| |
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|
| T |
6185939 |
aagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagct |
6185840 |
T |
|
| Q |
101 |
agtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | |||||||||||||||||| |||| || |
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|
| T |
6185839 |
agtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagatggtggtaaaagagaatgatt |
6185740 |
T |
|
| Q |
201 |
taacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaagcttgccaacatgctggtgtgaatgtcaaaatgat |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6185739 |
taacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgccggtgtgaatgtcaaaatgat |
6185640 |
T |
|
| Q |
301 |
tacaggtattactaaaatatcttatttat |
329 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |
|
|
| T |
6185639 |
tacaggtattactataatatctcatttat |
6185611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 447 - 645
Target Start/End: Complemental strand, 6185515 - 6185317
Alignment:
| Q |
447 |
aggtgataatgttttcactgcaaaagctatagcatttgaatgcggaattcttcaaccaaatcaggacacagatgaaacagtggttgaaggtgaacaattt |
546 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| |
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|
| T |
6185515 |
aggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattcttcaacctaatcaggacatagatgaaacggtggttgaaggcgaacaattt |
6185416 |
T |
|
| Q |
547 |
cgtaacttcacacacgaagagaggttggcgaaagttgagaaaatatctgtgatggcaaggtcttctccttttgataaacttctaatggtacaatgctta |
645 |
Q |
| |
|
|| ||||| || ||||||||||| || | || ||||| ||||||| |||||||||||| || ||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
6185415 |
cgcaactttacgcacgaagagagattagaaaaggttgaaaaaatatgtgtgatggcaagatcatctccatttgacaaacttctaatggttcaatgctta |
6185317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 402337 - 402298
Alignment:
| Q |
302 |
acaggtattactaaaatatcttatttatcgataacttgat |
341 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
402337 |
acaggtattactaaaatatctcatttatcgataacttgat |
402298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 45369930 - 45369992
Alignment:
| Q |
353 |
ctctatttatacatacgagtctatatgaatacgaagaagataataagaataactaattcttaa |
415 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | ||| | ||||| ||| ||||||||||||||| |
|
|
| T |
45369930 |
ctctatttatacatatgagtccatatgaaaatgaaaaggataacaaggataactaattcttaa |
45369992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 21847667 - 21847622
Alignment:
| Q |
31 |
tggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaa |
76 |
Q |
| |
|
|||||||| ||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
21847667 |
tggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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