View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7242_low_10 (Length: 249)
Name: NF7242_low_10
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18444440 - 18444204
Alignment:
| Q |
1 |
ctatgagcttgtgctcagagaaggatctccttgtctttgtattttgaaatgccgaggacggctttactagaacgtcgacatttttctgttgttgtaatag |
100 |
Q |
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| T |
18444440 |
ctatgagcttgtgcccagagaaggatctccttgtctttgtattttgaaataccgaggatggctttactagaacctcgacatttttctgttgttgtaatag |
18444341 |
T |
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| Q |
101 |
tatttttagactgtccaatatatttagggaatacgttgtttgtgtaacattgaatggctgtattttacattgtctcctaaacaatgaaacgcgttgaaca |
200 |
Q |
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| T |
18444340 |
tatttttagactgtccaatatatttagggaatacgttgtttgtgtaacattgaatggctgtattttacattgtctcctaaacgatgaaacacgttgaaca |
18444241 |
T |
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| Q |
201 |
tctcgttgaggcgggatacctttgtgaatcatagtat |
237 |
Q |
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| T |
18444240 |
tctcgttgaggcgggatacctttgtgaatcatagtat |
18444204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 33485836 - 33485737
Alignment:
| Q |
43 |
tttgaaatgccgaggacggctttactagaacgtcgacatttttctgttgttgtaatagtatttttagactgtccaatatatttagggaatacgttgtttg |
142 |
Q |
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| T |
33485836 |
tttgaaatgctgaggaagcctttactagaacctcgacatttttctgttgttgtaagtg---ttttagactgtccagtatattgcgggaataagttgtttg |
33485740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 33485699 - 33485619
Alignment:
| Q |
141 |
tgtgtaacattgaatggctgtattttacattgtctcctaaacaatgaaacgcgttgaacatctcgttgaggcgggatacct |
221 |
Q |
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| T |
33485699 |
tgtgtaacattgaatggttgtattttagattgtctcctaaaagatgagacacgttgaacatctatttgatgcaggatacct |
33485619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 55443707 - 55443557
Alignment:
| Q |
1 |
ctatgagcttgtgctcagagaaggatctccttgtctttgt--at-tttgaaatgccgaggacggctttactagaacgtcgacatt-tttctgttgttgta |
96 |
Q |
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| T |
55443707 |
ctatgagcttgttcttggaaaaggatctccttgtctttgtggatcttcaaaatgccgaggacgcctttactagaacctcgaaattctttc---tgttgta |
55443611 |
T |
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| Q |
97 |
atagtatttttagactgtccaatatatttagggaatacgttgtttgtgtaacattgaa |
154 |
Q |
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| T |
55443610 |
atagtgtttttagattgtcc----catttagggaataggttgtttttgtaacattgaa |
55443557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 55443533 - 55443465
Alignment:
| Q |
141 |
tgtgtaacattgaatggctgtattttacattgtctcctaaacaatgaaacgcgttgaacatctcgttga |
209 |
Q |
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| T |
55443533 |
tgtgtaacattgaatgattgtattttagattgtctcctaaaagatgagacacattgaacatctcattga |
55443465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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