View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7242_low_11 (Length: 241)
Name: NF7242_low_11
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18444537 - 18444747
Alignment:
| Q |
1 |
ccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaattactgcaatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18444537 |
ccatatgtagtagaagcaatgacatatcgggcatgtccctc------------catatggttaacacgagcattgatatcaaacaaattactgcaatttt |
18444624 |
T |
|
| Q |
101 |
ctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaatgtaaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18444625 |
ctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaaaagaagaaactacatcttggaagaaatgtaaacctt |
18444724 |
T |
|
| Q |
201 |
ccacgtctgttttgtgcctcctg |
223 |
Q |
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| |||||||||||||||||||| |
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| T |
18444725 |
cggcgtctgttttgtgcctcctg |
18444747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33486521 - 33486743
Alignment:
| Q |
1 |
ccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaattactgcaatttt |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||| |||||||||||| || |||||||| ||||||||| || || || |||| ||||||||||| |
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| T |
33486521 |
ccatatgtagtagaatcaatgacatatcggggatgtccttcgaccaatctactcgtatggttagcacgagcatcaatgtctaagaaataactgcaatttt |
33486620 |
T |
|
| Q |
101 |
ctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaatgtaaacctt |
200 |
Q |
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||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||| ||| |||||||| ||||||||||||| |
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| T |
33486621 |
ctttgctatatttggtattaaaacaggccaagtcagcaaaaaggaagaaacatcaagcaaacaaaagaagaaattacgtcttggaataaatgtaaacctt |
33486720 |
T |
|
| Q |
201 |
ccacgtctgttttgtgcctcctg |
223 |
Q |
| |
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|| |||||||| ||||||||||| |
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| T |
33486721 |
ccgcgtctgttgtgtgcctcctg |
33486743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33514879 - 33515095
Alignment:
| Q |
1 |
ccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaattactgcaatttt |
100 |
Q |
| |
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|||||| |||||||| ||||||||||||| || | || |||| ||||| | |||||| ||||||||||||| | |||| | |||| | ||||| || |
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| T |
33514879 |
ccatatctagtagaatcaatgacatatcgagcctctctttcgatcaatcgactcatatcattaacacgagcatcaacatcatagaaataatcgcaatgtt |
33514978 |
T |
|
| Q |
101 |
ctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaatgtaaacctt |
200 |
Q |
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|||| | |||||||||||| | | || ||| ||||||||||| ||||| |||||| |||| || | |||| || |||||| |||||||||||||||| |
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| T |
33514979 |
cttttccatatctggtattgacacagaccatgtcagtaaaaattaagaatcatcaaccaactaa---atgaaattatatcttgaaagaaatgtaaacctt |
33515075 |
T |
|
| Q |
201 |
ccacgtctgttttgtgcctc |
220 |
Q |
| |
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|||||||||| ||||||| |
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| T |
33515076 |
tcacgtctgttgcgtgcctc |
33515095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 55444344 - 55444540
Alignment:
| Q |
1 |
ccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaattactgcaatttt |
100 |
Q |
| |
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|||||| |||||||| |||||| |||| |||| |||| |||| ||||| | |||| | ||||||||||||| | | || | |||| |||||||| || |
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| T |
55444344 |
ccatatctagtagaatcaatgatatattgggcctgtctttcgatcaatcgactcatgtcattaacacgagcatcaacaacatagaaataactgcaatgtt |
55444443 |
T |
|
| Q |
101 |
ctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaatgtaaacctt |
200 |
Q |
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||| | ||| |||||||| | |||| ||| ||||||||||| ||||||||||| |||| || || |||||| |||||| ||||||| |||||||| |
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| T |
55444444 |
cttctccataactggtattgacatagaccatgtcagtaaaaatccagaaacatcaaccaactaa---aataaactatatcttgaaagaaatttaaacctt |
55444540 |
T |
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