View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7242_low_15 (Length: 224)
Name: NF7242_low_15
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36840527 - 36840323
Alignment:
| Q |
1 |
gtgatgttacatttccaaacactcttttggaagtttggaatgctagggtttctgctgggtaaaggatgaaaatcatgaaagtcttcacaatgtttatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840527 |
gtgatgttacatttccaaacactcttttggaagtttggaatgctagggtttctgctgggtaaaggatgaaaatcatgaaagtcttcacaatgtttatctt |
36840428 |
T |
|
| Q |
101 |
ttaaatcatatgcaaatttgatggctaaacaaagatgcgtcgtagttttcctcgaggatagggaggttctgaacttttctgtaaatgttgatgtcatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840427 |
ttaaatcatatgcaaatttgatggctaaac-aagatgcgtcgtagttttcctcgaggatagggaggttctgaacttttctgtaaatgttgatgtcatgaa |
36840329 |
T |
|
| Q |
201 |
gtaaat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
36840328 |
gtaaat |
36840323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 36847413 - 36847213
Alignment:
| Q |
2 |
tgatgttacatttccaaacactcttttggaagtttggaatgctagggtttctgctgggtaaaggatgaaaatcatgaaagtcttcacaatgtttatcttt |
101 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||||||| ||||| | | |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
36847413 |
tgatgtcacatttcttaacactcctttggaagtttggaatttcggggttgataccgggtaaaggatgaaaatcatgaaagtattcacaatgcttatcttc |
36847314 |
T |
|
| Q |
102 |
taaatcatatgcaaatttgatggctaaacaaagatgcgtcgtagttttcctcgaggatagggaggttctgaacttttctgtaaatgttgatgtcatgaag |
201 |
Q |
| |
|
|| ||||||||||| | || ||||||||| ||||||| | |||||||| ||| |||||||||||||| || ||||||||||| ||||||| |||||||| |
|
|
| T |
36847313 |
tagatcatatgcaattctgttggctaaac-aagatgccttgtagtttttctcaaggatagggaggttgagagcttttctgtaagtgttgatatcatgaag |
36847215 |
T |
|
| Q |
202 |
ta |
203 |
Q |
| |
|
|| |
|
|
| T |
36847214 |
ta |
36847213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 36835880 - 36835753
Alignment:
| Q |
75 |
atgaaagtcttcacaatgtttatcttttaaatcatatgcaaatttgatggctaaacaaagatgcgtcgt-agttttcctcgaggatagggaggttctgaa |
173 |
Q |
| |
|
|||||| ||||| || ||||||| || | ||||| ||||| |||| ||||||||||| |||| | || ||||||| || |||||||| ||||| ||| |
|
|
| T |
36835880 |
atgaaattcttcgcagtgtttatgttcaagatcatttgcaattttgttggctaaacaa-gatggcttgtcagttttc-tctaggataggaaggtttagaa |
36835783 |
T |
|
| Q |
174 |
cttttctgtaaatgttgatgtcatgaagta |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
36835782 |
cttttctgtatgtgttgatgtcatgaagta |
36835753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University