View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7242_low_2 (Length: 640)

Name: NF7242_low_2
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7242_low_2
NF7242_low_2
[»] chr1 (5 HSPs)
chr1 (15-437)||(8425134-8425556)
chr1 (15-200)||(30234221-30234406)
chr1 (431-624)||(8425578-8425775)
chr1 (241-437)||(30235361-30235552)
chr1 (199-244)||(30235004-30235049)
[»] chr3 (2 HSPs)
chr3 (15-393)||(1530477-1530854)
chr3 (210-307)||(26797819-26797915)
[»] chr5 (5 HSPs)
chr5 (15-393)||(22475860-22476237)
chr5 (158-437)||(26849095-26849358)
chr5 (15-134)||(26842255-26842378)
chr5 (280-393)||(15425483-15425591)
chr5 (459-488)||(26849420-26849449)
[»] chr4 (3 HSPs)
chr4 (241-394)||(5690016-5690166)
chr4 (263-394)||(25154144-25154270)
chr4 (199-242)||(25153751-25153794)
[»] chr2 (2 HSPs)
chr2 (241-394)||(29759042-29759190)
chr2 (199-244)||(29758696-29758741)
[»] chr7 (4 HSPs)
chr7 (59-200)||(39327811-39327952)
chr7 (245-309)||(39327292-39327356)
chr7 (199-244)||(39327668-39327713)
chr7 (199-244)||(39718781-39718826)
[»] chr8 (1 HSPs)
chr8 (210-309)||(8396719-8396817)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Original strand, 8425134 - 8425556
Alignment:
Q  15 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctga 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8425134 acatcatctccgtgaagggaatcaaaggtaggttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctga 8425233  T
Q  115 tctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgtt 214  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425234 tctcaggaagaaggttttgccagctgtcatcgttcgtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgtt 8425333  T
Q  215 attgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  8425334 attgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggagtgtgctgatctttggcctaggattgcaaatgctgccaagt 8425433  T
Q  315 gccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgccattgtggcaattttaatacaagagagaatcatctttatgttt 414  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425434 gccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgccgatgccattgtggcaattttaatacaagagagaatcatctttatgttt 8425533  T
Q  415 ttaggtctttcaagagattttgt 437  Q
    |||||||||||||||||||||||    
T  8425534 ttaggtctttcaagagattttgt 8425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 30234221 - 30234406
Alignment:
Q  15 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctga 114  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  30234221 acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga 30234320  T
Q  115 tctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag 200  Q
    |||||||||||||||||||||||||| ||||||||| ||| | ||||| ||||||| |||||| ||||||||||||||||| ||||    
T  30234321 tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag 30234406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 431 - 624
Target Start/End: Original strand, 8425578 - 8425775
Alignment:
Q  431 attttgtctttccttgaattatgtttaattggttggatttagaagatgattaattggtcgaatnnnnnnnnnnnta-----catgatattagagtaaatg 525  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||           ||     |||||||||||||||||||    
T  8425578 attttgtctttccttgacttatgtttaattggttggatttagaagatgattaattggtcggataaaaaaaatattaaattacatgatattagagtaaatg 8425677  T
Q  526 agtaaattatcttttttatcaaatcatattgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttag 624  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425678 agtaaattatctttt-tatcaaatcatactgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttag 8425775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 241 - 437
Target Start/End: Original strand, 30235361 - 30235552
Alignment:
Q  241 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggat 340  Q
    ||||||||||||||| || ||||||| |||||  |||| |||||||||||||||||||||||||||||||       |||||||| ||||||| ||||||    
T  30235361 aggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgcc-------aatgccattgtatgagcgtggat 30235453  T
Q  341 tctgtttcaagattgcaagtagtgtcgatgccat--tgtggcaattttaatacaagagagaatcatctttatgtttttaggtctttcaagagattttgt 437  Q
    |||||||||||||||||||||||| |||||||||  |||| |||||||||||||||||| | | |||||||||||||||||| || |||||||||||||    
T  30235454 tctgtttcaagattgcaagtagtgccgatgccattgtgtgacaattttaatacaagagatacttatctttatgtttttaggttttgcaagagattttgt 30235552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 30235004 - 30235049
Alignment:
Q  199 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235004 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 30235049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 1530477 - 1530854
Alignment:
Q  15 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaac 110  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||| ||||    
T  1530477 acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaac 1530576  T
Q  111 ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctgg 210  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||||  ||    
T  1530577 ctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacgg 1530676  T
Q  211 tgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgcc 310  Q
      |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||| ||| |||||||||| ||||||||||||        
T  1530677 cattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgc---- 1530772  T
Q  311 aagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcca--ttgtggcaattttaatacaa 393  Q
       |||||||||||| ||||||||||||||| ||||||||||||||| ||||||  |||||||  |||||| |||||||||||||    
T  1530773 ---tgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaa 1530854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 26797915 - 26797819
Alignment:
Q  210 gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgct 307  Q
    |||||||||| ||||| |||| |||||||||||| |||||||| | ||| |||||||| |||| ||||| |||| | ||| |||||||||||||||||    
T  26797915 gtgttattgttaatccaaagg-agaaatgaaagggtctgctattagtggtccaattgggaaggagtgtgctgatttatggtctaggattgcaagtgct 26797819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 22476237 - 22475860
Alignment:
Q  15 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaac 110  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||    
T  22476237 acatcatctctgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaac 22476138  T
Q  111 ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctgg 210  Q
    ||||||||| ||||||||||||||||| || ||||||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||| ||    
T  22476137 ctgatctcatgaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttcaaagataatgccgg 22476038  T
Q  211 tgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgcc 310  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| |||||||||| ||||||||||||||      
T  22476037 cgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggcaacgagtgtgctgagctttggcctatgattgcaagtgctg-- 22475940  T
Q  311 aagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcca--ttgtggcaattttaatacaa 393  Q
         ||||| |||| ||||||||||||||| ||||||||||||||| ||||||  |||||||  || ||| |||||||||||||    
T  22475939 -----ccaataccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttttggaaattttaatacaa 22475860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 158 - 437
Target Start/End: Original strand, 26849095 - 26849358
Alignment:
Q  158 aagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactg 257  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||           ||||||||    
T  26849095 aagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg-----------tatcactg 26849183  T
Q  258 gaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggattctgtttcaagattgca 357  Q
    ||||||||||||| |  |||| ||| |||||||||| ||||||||||||||||       |||||||| ||||||||||||||| |||||||||||||||    
T  26849184 gaccaattggtaatgaatgtgctgagctttggcctatgattgcaagtgctgcc-------aatgccattgtatgagtgtggattatgtttcaagattgca 26849276  T
Q  358 agtagtgtcgatgccatt--gtggcaattttaatacaagagagaatcatctttatgtttttaggtctttcaagagattttgt 437  Q
     ||||||  |||||||||  |||| ||||||||| |||| || | |  |||||||||||||||||||| |||||||||||||    
T  26849277 ggtagtgctgatgccatttagtggaaattttaatccaagcgaaacttttctttatgtttttaggtcttgcaagagattttgt 26849358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 26842255 - 26842378
Alignment:
Q  15 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaagaagggaaaac 110  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||| ||    
T  26842255 acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatac 26842354  T
Q  111 ctgatctcaggaagaaggttttgc 134  Q
    ||||||||||||||||||||||||    
T  26842355 ctgatctcaggaagaaggttttgc 26842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 393
Target Start/End: Original strand, 15425483 - 15425591
Alignment:
Q  280 tgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcc--attgt 377  Q
    |||| ||||||||||||||||||||||||||       |||||||| |||||||||| |||||||||||||||| |||||||||  |||||||   ||||    
T  15425483 tgatatttggcctaggattgcaagtgctgcc-------aatgccattgtatgagtgttgattctgtttcaagatcgcaagtagttccgatgcccttttgt 15425575  T
Q  378 ggcaattttaatacaa 393  Q
    |||| |||||||||||    
T  15425576 ggcagttttaatacaa 15425591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 488
Target Start/End: Original strand, 26849420 - 26849449
Alignment:
Q  459 ttggttggatttagaagatgattaattggt 488  Q
    ||||||||||||||||||||||||||||||    
T  26849420 ttggttggatttagaagatgattaattggt 26849449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 241 - 394
Target Start/End: Complemental strand, 5690166 - 5690016
Alignment:
Q  241 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggat 340  Q
    |||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||       |||||||||| |||||||||| |||    
T  5690166 aggttccgctatcacaggaccaattggtaaggagtgtgctgatctttggcctaggattgcaagtgctg-------ccaatgccattgtatgagtgttgat 5690074  T
Q  341 tctgtttcaag--attgcaagtagtgtcgatgcc--attgtggcaattttaatacaag 394  Q
    |||||||||||  ||||||||||||   ||||||   |||||||| ||||||||||||    
T  5690073 tctgtttcaagatattgcaagtagttctgatgcccttttgtggcagttttaatacaag 5690016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 263 - 394
Target Start/End: Original strand, 25154144 - 25154270
Alignment:
Q  263 attggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtag 362  Q
    |||| ||||| || || |||||||||||||||||||||||||||||||       |||||||| | |||||||| |||||||||||||||||||||||||    
T  25154144 attgataaggagtatgctgatctttggcctaggattgcaagtgctgcc-------aatgccattgcatgagtgttgattctgtttcaagattgcaagtag 25154236  T
Q  363 tgtcgatgcc--attgtggcaattttaatacaag 394  Q
    |  |||||||   |||||||| ||||||||||||    
T  25154237 ttccgatgcccttttgtggcagttttaatacaag 25154270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 25153751 - 25153794
Alignment:
Q  199 agataatgctggtgttattgtgaatcctaagggagaaatgaaag 242  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25153751 agataattctggtgttattgttaatcctaagggagaaatgaaag 25153794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 241 - 394
Target Start/End: Original strand, 29759042 - 29759190
Alignment:
Q  241 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggat 340  Q
    |||||| | |||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||       |||||||| ||| |||||||||| |||    
T  29759042 aggttccgttatcacaggaccaattggaaaggagtgtgctgatctttggcctaggattgcaagtgc-------tgccaatgtcattgtatgagtgttgat 29759134  T
Q  341 tctgtttcaagattgcaagtagtgtcgatgcc--attgtggcaattttaatacaag 394  Q
    |||||||||||||||||||||||  | |||||   |||||||| ||||||||||||    
T  29759135 tctgtttcaagattgcaagtagttccaatgcccttttgtggcagttttaatacaag 29759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 29758696 - 29758741
Alignment:
Q  199 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758696 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 29758741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 39327952 - 39327811
Alignment:
Q  59 ccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgca 158  Q
    ||||||||||| | |||||||||||||||||| ||  ||||||||||||| ||||||||| | ||||||||  | || || | ||||||||| ||| | |    
T  39327952 ccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgta 39327853  T
Q  159 agccttggcgcccaaaggatggtgtcttcatgtacttcgaag 200  Q
    | || ||||||| |||||| ||||| ||||||||||||||||    
T  39327852 aaccatggcgccgaaaggacggtgttttcatgtacttcgaag 39327811  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 39327356 - 39327292
Alignment:
Q  245 tctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgc 309  Q
    |||||||| ||||| |||||||  |||| ||||| |||||| |||||||||||||||||||||||    
T  39327356 tctgctattactggtccaattgcgaaggagtgtgctgatctatggcctaggattgcaagtgctgc 39327292  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 39327713 - 39327668
Alignment:
Q  199 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 244  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||    
T  39327713 agataatgctggtgttattgttaatcccaaaggagaaatgaaaggt 39327668  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 39718826 - 39718781
Alignment:
Q  199 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 244  Q
    ||||||||||||||||||||| ||||| || |||||||| ||||||    
T  39718826 agataatgctggtgttattgttaatcccaaaggagaaataaaaggt 39718781  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 8396817 - 8396719
Alignment:
Q  210 gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgc 309  Q
    |||||||||| ||||| |||| |||||||||||| ||| |||| ||||| | |||||| |||| ||||| |||| | ||| |||||||||||||||||||    
T  8396817 gtgttattgttaatccaaagg-agaaatgaaagggtctactattactggtcgaattgggaaggagtgtgctgatttatggtctaggattgcaagtgctgc 8396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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