View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7242_low_3 (Length: 465)
Name: NF7242_low_3
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 21115423 - 21114980
Alignment:
| Q |
1 |
tggttatcaggaccttccatgtgtgctcgttaacattgtctaagagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21115423 |
tggttatcaggaccttccatgtgtgctcgttaacattgtctacgagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataag |
21115324 |
T |
|
| Q |
101 |
aattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21115323 |
aattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccc |
21115224 |
T |
|
| Q |
201 |
tgaatgcctctaatatttggagtttgagagacagtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaaggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21115223 |
tgaatgcctctaatatttggagtttgagcgacagtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaaggg |
21115124 |
T |
|
| Q |
301 |
ttgtttttccgcatccacccattccatacattcctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21115123 |
ttgtttttccgcatccacccattccatacattcctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgattc |
21115024 |
T |
|
| Q |
401 |
aaaataaatgaattcttcaaatgaccgatacctaatacctggta |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21115023 |
aaaataaatgaattcttcaaatgaccgatacctgctacctggta |
21114980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 34 - 444
Target Start/End: Complemental strand, 21122817 - 21122407
Alignment:
| Q |
34 |
cattgtctaagagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataagaattcgcttcttttgttttaaacacaaccataa |
133 |
Q |
| |
|
|||||| |||| |||||||| ||| |||||||||||||||||||||||| ||| |||||||||||| ||| |||| ||| |||||||| |||||||| |
|
|
| T |
21122817 |
cattgtataagcgaatccctgtatccttcaaatgaaactctctccatagattgtcaactattataagagttctcttcatttcttttaaacgcaaccatag |
21122718 |
T |
|
| Q |
134 |
acgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgagagaca |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||| ||||| ||||||||| | || |
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|
| T |
21122717 |
acgttgtgctcttccatcttcactttcttcccccaatttcaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttcttgtcacg |
21122618 |
T |
|
| Q |
234 |
gtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaagggttgtttttccgcatccacccattccatacattc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||| |||| || |
|
|
| T |
21122617 |
gtgattgatataaccttatcaaacatatccaattcctcagccttcttgccaacttccgttacaagggttgtttttccacatccacccattccgtacagtc |
21122518 |
T |
|
| Q |
334 |
ctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgattcaaaataaatgaattcttcaaatgaccgatacct |
433 |
Q |
| |
|
| ||||||||||||| |||||||| |||||||| ||| |||| || |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
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|
| T |
21122517 |
caattatagagatgcgatcatcctcaagtgccttcaagagtttatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatacag |
21122418 |
T |
|
| Q |
434 |
aatacctggta |
444 |
Q |
| |
|
||||||||||| |
|
|
| T |
21122417 |
aatacctggta |
21122407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 29 - 399
Target Start/End: Original strand, 21715568 - 21715938
Alignment:
| Q |
29 |
gttaacattgtctaagagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataagaattcgcttcttttgttttaaacacaac |
128 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||| ||||||| |||||| ||| || | ||| | ||||||||| || |||| ||| |||| |||| |
|
|
| T |
21715568 |
gttaacattgtctatgtgaatccctatattcatcaaattaaactctttccataaatcatcaattataacaagaattcgtttattttctttcaaactcaac |
21715667 |
T |
|
| Q |
129 |
cataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgag |
228 |
Q |
| |
|
|| || |||||||||||||||||||| |||||||||| | ||||||||||||||| ||||| | |||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
21715668 |
cacaaccgttgtgctcttccctcttcgctttcttccttgagtttcaagtttaacatgtctgccatttttccttgaatgtctctaatattttgagtttgag |
21715767 |
T |
|
| Q |
229 |
agacagtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaagggttgtttttccgcatccacccattccata |
328 |
Q |
| |
|
| || ||||| ||||| |||||||| ||||||| | |||||| ||||||||| || ||||| | | |||| |||||||| || ||||||||||||||||| |
|
|
| T |
21715768 |
acactgtgatagatattaccttatcgaacatatttgattcctgagccttcttaccgacttcggttacaagtgttgttttcccacatccacccattccata |
21715867 |
T |
|
| Q |
329 |
cattcctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgatt |
399 |
Q |
| |
|
|| ||||| ||| ||||||||||||| || ||| |||||| || |||||||||||| | |||||||||| |
|
|
| T |
21715868 |
cacacctatcatatagatgcaatcatcatttagtaactccaagagctgattgtaagccgcttttgttgatt |
21715938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 125 - 399
Target Start/End: Complemental strand, 21703851 - 21703577
Alignment:
| Q |
125 |
caaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtt |
224 |
Q |
| |
|
|||||| ||||||||||||||| | |||||| |||||| | |||||||||||||| | |||| | |||||| ||||| ||||| ||||||||| |
|
|
| T |
21703851 |
caaccacaaacgttgtgctctttcgtcttcatcttcttcactgagtttcaagtttaacaaagctgccatttttccttgaatttttctaacgtttggagtt |
21703752 |
T |
|
| Q |
225 |
tgagagacagtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaagggttgtttttccgcatccacccattc |
324 |
Q |
| |
|
||||| || |||||| | ||||||||||| ||||||| | |||||||||||||||| |||||||| | |||||| |||||||| || ||||||||||||| |
|
|
| T |
21703751 |
tgagacactgtgattaagataaccttatcgaacatatttgattcctcagccttcttaccaacttcagttgcaagagttgttttcccacatccacccattc |
21703652 |
T |
|
| Q |
325 |
catacattcctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgatt |
399 |
Q |
| |
|
|||||| |||||| ||| ||||||||| || ||| |||||| || |||||||| ||||||||||| |||| |
|
|
| T |
21703651 |
catacactcctatcatatggatgcaatcgtcacgtagtaactccaacagctgattgtatgccacctttgtagatt |
21703577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 76 - 279
Target Start/End: Complemental strand, 21644174 - 21643971
Alignment:
| Q |
76 |
tccatagatcgtccactattataagaattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaa |
175 |
Q |
| |
|
|||||| ||| || ||||| | ||||||||| || |||| | | |||| |||||| || |||||||||||||||||||| |||||||| | | |||||| |
|
|
| T |
21644174 |
tccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaa |
21644075 |
T |
|
| Q |
176 |
gtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgagagacagtgattgatataaccttatcaaacatatctaattcctcagcc |
275 |
Q |
| |
|
||||||||| ||||| | |||||| |||||| ||||||||||| |||||||||| | ||||| ||||| ||||| || ||||||| | |||||| ||| |
|
|
| T |
21644074 |
gtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggcc |
21643975 |
T |
|
| Q |
276 |
ttct |
279 |
Q |
| |
|
|||| |
|
|
| T |
21643974 |
ttct |
21643971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 279
Target Start/End: Complemental strand, 21622460 - 21622257
Alignment:
| Q |
76 |
tccatagatcgtccactattataagaattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaa |
175 |
Q |
| |
|
|||||| ||| || ||||| | ||||||||| || |||| | | |||| ||||||||| |||||||||||||||||||| |||||||| | | |||||| |
|
|
| T |
21622460 |
tccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccataaccgttgtgctcttccctcttcgctttcttcattgagtttcaa |
21622361 |
T |
|
| Q |
176 |
gtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgagagacagtgattgatataaccttatcaaacatatctaattcctcagcc |
275 |
Q |
| |
|
||||||||| ||| | | |||||| ||||| ||||||||||| |||||||||| | ||||| ||||| ||||| || ||||||| | |||||| ||| |
|
|
| T |
21622360 |
gtttaacatgtctaccatttttccatgaatatctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggcc |
21622261 |
T |
|
| Q |
276 |
ttct |
279 |
Q |
| |
|
|||| |
|
|
| T |
21622260 |
ttct |
21622257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 29 - 407
Target Start/End: Original strand, 23010470 - 23010848
Alignment:
| Q |
29 |
gttaacattgtctaagagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataagaattcgcttcttttgttttaaacacaac |
128 |
Q |
| |
|
|||| ||||||||||| ||||||||| || |||||| |||||||||||||| ||| || ||||||| ||||| |||||||||| ||| |||| |||| |
|
|
| T |
23010470 |
gttatcattgtctaagcgaatccctacatcgttcaaatcaaactctctccataaatcatctactattacgagaatccgcttcttttctttcaaactcaac |
23010569 |
T |
|
| Q |
129 |
cataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgag |
228 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||| ||| || | ||| || | |||||| ||||| |||||||||| |||||||||| |
|
|
| T |
23010570 |
cacaaacgttgtgctcttccctcatcactttcttcctccaatttcatgttcaaaacatcagctatttttccttgaatatctctaatattgggagtttgag |
23010669 |
T |
|
| Q |
229 |
agacagtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaagggttgtttttccgcatccacccattccata |
328 |
Q |
| |
|
| || || ||| ||||| ||| ||||| | || | || | ||| ||||||| |||||||| | |||| | |||||| || ||| ||||||||||| |
|
|
| T |
23010670 |
acactgtaattaatatagtcttgtcaaaaacatttgatgcttcaaccttcttaccaacttcagtaacaagagctgttttcccagttccgcccattccata |
23010769 |
T |
|
| Q |
329 |
cattcctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgattcaaaataa |
407 |
Q |
| |
|
|| |||||| || ||||| || || ||||||||||| ||||||| || |||||| |||||||||||||||||| |
|
|
| T |
23010770 |
cactcctatcatgtagatgtcctcgtctcgaagtgcctccagtagttgactgctagccacttttgttgattcaaaataa |
23010848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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