View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7242_low_8 (Length: 285)
Name: NF7242_low_8
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 104 - 269
Target Start/End: Original strand, 13980411 - 13980576
Alignment:
| Q |
104 |
gtcaattgaagatgactaaagacgccccagaatcgagtggaggtgcattccatgcggttcatgcagaacgtgacttacaatccaattgggaagttgacct |
203 |
Q |
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| T |
13980411 |
gtcaattgaagatgactaaagacgccccagaatcaagtggaggtgcattccatgcggttcatgcagaacgtgacttacaatccaattgggaagttgacct |
13980510 |
T |
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| Q |
204 |
agccaagaaacttgaagagtatttgttgaaaatatgttctggtgaaatcactggtgaagaacatgt |
269 |
Q |
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| T |
13980511 |
agccaagaaacttgaagagtatttgttgaaaatatgttctggtgaaatcactggtgaagaacatgt |
13980576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 104 - 270
Target Start/End: Original strand, 22970757 - 22970922
Alignment:
| Q |
104 |
gtcaattgaagatgactaaagacgccccagaatcgagtggaggtgcattccatgcggttcatgcagaacgtgacttacaatccaattgggaagttgacct |
203 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||| |
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| T |
22970757 |
gtcaattgaagatgactaaagacaccccagaatcgagtggaggtgcattccatgtgactcattcgtaacgtgacttacaatccaattgggaagttgacct |
22970856 |
T |
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| Q |
204 |
agccaagaaacttgaagagtatttgttgaaaatatgttctggtgaaatcactggtgaagaacatgtt |
270 |
Q |
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| T |
22970857 |
agccaagaaacttgaagagtgtttgttgaaaatatgttcttgtgaaatcac-cgtgaagaacatgtt |
22970922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 23817640 - 23817475
Alignment:
| Q |
104 |
gtcaattgaagatgactaaagacgccccagaatcgagtggaggtgcattccatgcggttcatgcagaacgtgacttacaatccaattgggaagttgacct |
203 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||| |
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| T |
23817640 |
gtcaattgaagatgactaaagacaccccagaatcgagtggaggtgcattccatgtgactcattcgtaacgtgacttacaatccaattgggaagttgacct |
23817541 |
T |
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| Q |
204 |
agccaagaaacttgaagagtatttgttgaaaatatgttctggtgaaatcactggtgaagaacatgtt |
270 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
23817540 |
agccaagaaacttgaagagtgtttgttgaaaatatgttcttgtgaaatcac-cgtgaagaacatgtt |
23817475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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