View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7242_low_9 (Length: 254)
Name: NF7242_low_9
Description: NF7242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7242_low_9 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 136472 - 136708
Alignment:
| Q |
18 |
gaagagcttataataaatatattcctaaaatatatagaagtcctttagaaaaatatgcacatttgctactcataattaacaatcataatatacaacacga |
117 |
Q |
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| T |
136472 |
gaagagcttataataaatatattcctaaaatatatagaagtcctttagaaaaatatgcacatttgctactcataattaacaatcataatatacaacacga |
136571 |
T |
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| Q |
118 |
tgttttcaaccattaaagcattggacaaatcttacaaaaacaagcattttttcaaccatcacatgattttatacaacagaatcactcattaaagcattgt |
217 |
Q |
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| T |
136572 |
tgttttcaaccattaaagcattggacaaatcttacaaaaacaagcattttttcaaccatcacatgattttatacaacagattcactcattaaagcatagt |
136671 |
T |
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| Q |
218 |
gaacagccttgcaatacatatgcaacgcgatgtttgc |
254 |
Q |
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| T |
136672 |
gaacagccttgcaatacatatacaacacgatgtttgc |
136708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 140306 - 140348
Alignment:
| Q |
212 |
cattgtgaacagccttgcaatacatatgcaacgcgatgtttgc |
254 |
Q |
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| T |
140306 |
cattgtgaacagccttgcagtacatatacaacacgatgtttgc |
140348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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