View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7243_high_10 (Length: 298)
Name: NF7243_high_10
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 40458232 - 40458519
Alignment:
| Q |
1 |
cttccatcaaaaattagtttgaatatattgccattgtcatttctcaaactgaagttggtaccatgcatatttccttcctctcacacgtatagaacaggga |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
40458232 |
cttccatcaataattagtttgaatatattgccattgtcattgctcaaattgaagctggtaccatgcatagttccttcctc--acacgta--gaacaggga |
40458327 |
T |
|
| Q |
101 |
gtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacagttatccaaatc |
200 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40458328 |
gtatattaggagcatcaaagtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatc |
40458427 |
T |
|
| Q |
201 |
aagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttattattttccatattcttcga |
292 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
40458428 |
aagaaaaccaactccctcctatccatatgacctcacaaaaaccatcatatcccttatcacaatgttctcttattatttctcatagtcttcga |
40458519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 43408680 - 43408393
Alignment:
| Q |
1 |
cttccatcaaaaattagtttgaatatattgccattgtcatttctcaaactgaagttggtaccatgcatatttccttcctctcacacgtatagaacaggga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||||| |
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| T |
43408680 |
cttccatcaataattagtttgaatatattgccattgtcattgctcaaattgaagctggtaccatgcatagttccttcctc--acacgta--gaacaggga |
43408585 |
T |
|
| Q |
101 |
gtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacagttatccaaatc |
200 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43408584 |
gtatattaggagcatcaaagtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatc |
43408485 |
T |
|
| Q |
201 |
aagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttattattttccatattcttcga |
292 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
43408484 |
aagaaaaccaactccctcctatccatatgacctcacaaaaaccatcatatcccttatcacaatgttctcttattatttctcatagtcttcga |
43408393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 37668061 - 37667784
Alignment:
| Q |
1 |
cttccatcaaaaattagtttgaatatattgccattgtcatttctcaaactgaagttggtaccatgcatatttccttcctctcacacgtatagaacaggga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37668061 |
cttccatcaataattagtttgaatatattcccattgtcattgct------------ggtaccatgcatatttccttcctctcacacgta--gaacaggga |
37667976 |
T |
|
| Q |
101 |
gtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacagttatccaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37667975 |
gtatattatgagcatcaaggtattctagttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatc |
37667876 |
T |
|
| Q |
201 |
aagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttattattttccatattcttcga |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
37667875 |
aagaaaacaaactccctcctatccatatgacctcacgcaaaccatcatatcccttatcacaatgttctcctattattttctatagtcttcga |
37667784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 22403195 - 22403242
Alignment:
| Q |
104 |
tattatgagcatcaaggtattctagttccttgaattcattagtttggt |
151 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
22403195 |
tattatgaccatcaaggtattctaattccttgaattcattagtttggt |
22403242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 22403246 - 22403344
Alignment:
| Q |
176 |
ttacatcaatacagttatccaaatcaagaaaacaaactccctcctatccatatgacctcacacaaaccatcatatcccttatcacaatgttctcttatta |
275 |
Q |
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|||||| |||||| ||||||||||||||||||||||| |||||| | |||||| | |||| |||| | ||||||||||| || |||||||||||| |
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| T |
22403246 |
ttacattaatacaattatccaaatcaagaaaacaaaccccctcccacgcatatggcttcacgcaaaac----catcccttatcaaaaagttctcttatta |
22403341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 11968540 - 11968508
Alignment:
| Q |
252 |
ccttatcacaatgttctcttattattttccata |
284 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
11968540 |
ccttatcacaatgttctcttattattttccata |
11968508 |
T |
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