View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7243_high_12 (Length: 268)
Name: NF7243_high_12
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 43607107 - 43606873
Alignment:
| Q |
13 |
gtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtactatgagttgtgaagtagaaggatgaaatccct |
112 |
Q |
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| T |
43607107 |
gtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtactatgagttgtgaagtagaaggatgaaatccct |
43607008 |
T |
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| Q |
113 |
tccttgttcttgtttgggtgaatgttatgggttggttnnnnnnnnnnnnnnnnnnnnngtggtaaccgtagtagtcatccctgagagtttcagccattga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607007 |
tccttgttcttgtttgggtgaatgttatgggttggtt---ctgctgctgctgctgctggtggtaaccgtagtagtcatccctgagagtttcagccattga |
43606911 |
T |
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| Q |
213 |
attaggaatatgtcttagactcttagtttagttcagtt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43606910 |
attaggaatatgtcttagactcttagtttagttcagtt |
43606873 |
T |
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