View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7243_high_6 (Length: 386)
Name: NF7243_high_6
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 25771632 - 25771483
Alignment:
| Q |
88 |
ttaaattcaagttttgcaatgcaaatactgtgttcttagctcttctgtctaaattttcgctaaattcnnnnnnnngctctttggacaagatatttgtcgc |
187 |
Q |
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| T |
25771632 |
ttaaattcaagttttgcaatgcaaataccgtgttctctgctcttctttctcaattttaactaaattcttttttt-gctctt-ggaca-gaaatttgttgc |
25771536 |
T |
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| Q |
188 |
tgctctagatcatcgaactcgttgctaatgtgttgatgcaagatggaagatca |
240 |
Q |
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| T |
25771535 |
tgctctagatcattgaactcgttgctaatgtgttgatgcaagatggatgatca |
25771483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 25761228 - 25761128
Alignment:
| Q |
187 |
ctgctctagatcatcgaactcgttgctaatgtgttgatgcaa-gatggaagatcaggtacatcatttcaagaagattaaaatctaaaaagagcatgcaat |
285 |
Q |
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| T |
25761228 |
ctgctcaagatcaatgaactcatttctaatgtgttgatgcaaagattgatgatcaggtacatcatttcgagaagattaaaatctaaaaagagcatgcaat |
25761129 |
T |
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| Q |
286 |
t |
286 |
Q |
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| T |
25761128 |
t |
25761128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 45302055 - 45302154
Alignment:
| Q |
191 |
tctagatcatcgaactcgttgctaatg----tgttgatgcaagatggaagatcaggtacatcatttcaagaagattaaaatctaaaaagagcatgcaatt |
286 |
Q |
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| T |
45302055 |
tctagatcatcaaactcgttgctaatgactgtgctgatacaaaatggatgataagatacatcatttcaagaagattaaaatctaaaaagagcatacaatt |
45302154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 45302173 - 45302220
Alignment:
| Q |
307 |
agacgtatctaaactcctctttcaataggcgttctttttcaagttctt |
354 |
Q |
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| T |
45302173 |
agacttatctaaactcctctttcaacaggctttctttttcaagttctt |
45302220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 45301557 - 45301628
Alignment:
| Q |
21 |
tcatgtgattgagacaataatatcaaagagaacatgaaaaacaaacagcaagacatat--gaggccagatta |
90 |
Q |
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| T |
45301557 |
tcatgtaattgagaccataatatcgaagcggacatgaataacaaatagcaatacatatatgaggccagatta |
45301628 |
T |
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