View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7243_low_11 (Length: 338)
Name: NF7243_low_11
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 30079236 - 30079549
Alignment:
| Q |
12 |
cgaagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacatatttccaccctgcaaaagatgctga |
111 |
Q |
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| T |
30079236 |
cgaagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacatacttccaccctgcaaaagatgctga |
30079335 |
T |
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| Q |
112 |
tgtgttcaattggcaggacagaatgaggcatttagagaggaagtggctcttctcatttgctggagctccccgtcctgacaatgccaaatcaatcaggggt |
211 |
Q |
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| T |
30079336 |
tgtgttcaattggcaggacagaatgaggcatttagagaggaagtggcttttctcatttgctggagctccccgtcctgacaatgccaaatcaatcaggggt |
30079435 |
T |
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| Q |
212 |
cagttaattgagcaatgcagaagttcaccggttggtaagcttttggaatgtgacttcggtgaaagcaaatgtcattctcccagtagcataatgcagatgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079436 |
cagttaattgagcaatgcagaagttcaccggttggtaagcttttggaatgcgacttcggtgaaagcaaatgtcattctcccagtagcataatgcagatgt |
30079535 |
T |
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| Q |
312 |
ttcaaagctcacag |
325 |
Q |
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|||||||||||||| |
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| T |
30079536 |
ttcaaagctcacag |
30079549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 39485909 - 39485608
Alignment:
| Q |
14 |
aagaatatgtccatgcttgtggtagagtcgagtccatggaatgcaaatgattttgggattccttatcctacatatttccaccctgcaaaagatgctgatg |
113 |
Q |
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||||||||||| |||||||| || || || ||||| |||||||| ||||||||||||||||||||||| || |||||||| || || |||||| |||| |
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| T |
39485909 |
aagaatatgtctatgcttgttgttgaatctagtccttggaatgctaatgattttgggattccttatccgacgtatttccatcccgcgaaagataaggatg |
39485810 |
T |
|
| Q |
114 |
tgttcaattggcaggacagaatgaggcatttagagaggaagtggctcttctcatttgctggagctccccgtcctgacaatgccaaatcaatcaggggtca |
213 |
Q |
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| || ||||||||| || ||||| || |||||||| ||||| ||||| ||||| || || || ||||||| ||||| ||||| || |||||||| |
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| T |
39485809 |
tttttgtttggcaggagaggatgagaaggttggagaggaaatggcttttctcttttgcgggtgcacctcgtcctggtaatgcaaaatcgattaggggtca |
39485710 |
T |
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| Q |
214 |
gttaattgagcaatgcagaagttcaccggttggtaagcttttggaatgtgacttcggtgaaagcaaatgtcattctcccagtagcataatgcagatgttt |
313 |
Q |
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| ||||||||||||| || ||||| ||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
39485709 |
gataattgagcaatgtaggagttctaaagttggtaagcttttggagtgtgattttggggaaagtaaatgtcattctcctagtagcataatgcagatgttt |
39485610 |
T |
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| Q |
314 |
ca |
315 |
Q |
| |
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|| |
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| T |
39485609 |
ca |
39485608 |
T |
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