View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7243_low_2 (Length: 618)

Name: NF7243_low_2
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7243_low_2
NF7243_low_2
[»] chr4 (5 HSPs)
chr4 (279-332)||(48742646-48742699)
chr4 (155-208)||(48742773-48742826)
chr4 (123-188)||(4876024-4876089)
chr4 (289-318)||(54290707-54290736)
chr4 (286-318)||(37895144-37895176)
[»] chr1 (3 HSPs)
chr1 (123-191)||(40399701-40399769)
chr1 (567-608)||(22150622-22150663)
chr1 (279-321)||(34287781-34287823)
[»] scaffold0129 (4 HSPs)
scaffold0129 (279-329)||(9778-9828)
scaffold0129 (282-332)||(17824-17874)
scaffold0129 (282-332)||(34220-34270)
scaffold0129 (88-190)||(9596-9698)
[»] chr5 (3 HSPs)
chr5 (81-191)||(42630455-42630565)
chr5 (279-321)||(42841260-42841302)
chr5 (288-320)||(29417496-29417528)
[»] scaffold0134 (1 HSPs)
scaffold0134 (279-316)||(16972-17009)
[»] chr8 (6 HSPs)
chr8 (124-191)||(12651405-12651472)
chr8 (124-183)||(18140242-18140301)
chr8 (129-191)||(12646278-12646340)
chr8 (284-342)||(31135678-31135736)
chr8 (567-608)||(3046729-3046770)
chr8 (279-332)||(24465718-24465771)
[»] chr2 (3 HSPs)
chr2 (279-326)||(16920299-16920346)
chr2 (113-195)||(44142263-44142345)
chr2 (155-191)||(7429833-7429869)
[»] chr7 (5 HSPs)
chr7 (113-182)||(5441565-5441634)
chr7 (113-182)||(5450575-5450644)
chr7 (567-608)||(22205248-22205289)
chr7 (567-608)||(22229450-22229491)
chr7 (124-188)||(25627371-25627435)
[»] chr3 (2 HSPs)
chr3 (567-608)||(29359832-29359873)
chr3 (282-326)||(46502183-46502227)
[»] scaffold0054 (1 HSPs)
scaffold0054 (285-317)||(34180-34212)
[»] chr6 (2 HSPs)
chr6 (88-168)||(21379306-21379386)
chr6 (156-188)||(34259099-34259131)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 48742699 - 48742646
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagattggccacctccgtttca 332  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  48742699 ttctggtgagacgtttgagaataaggtcaaattagattggccacctccatttca 48742646  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 48742826 - 48742773
Alignment:
Q  155 atttcatgaacatgtaccgcaacaatttcatatccaataataatttttcttatg 208  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||    
T  48742826 atttcatgaacatgtaccgcaactatttcatatctaataatcattcttcttatg 48742773  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 4876024 - 4876089
Alignment:
Q  123 caaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatatc 188  Q
    ||||| || ||||||||||||  |||||| | ||||||||||||||| ||||| ||||||||||||    
T  4876024 caaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcatatc 4876089  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 54290707 - 54290736
Alignment:
Q  289 aggtttgagaataaagtcaaattagattgg 318  Q
    ||||||||||||||||||||||||||||||    
T  54290707 aggtttgagaataaagtcaaattagattgg 54290736  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 37895144 - 37895176
Alignment:
Q  286 gagaggtttgagaataaagtcaaattagattgg 318  Q
    |||||||||| ||||||||||||||||||||||    
T  37895144 gagaggtttgtgaataaagtcaaattagattgg 37895176  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 40399769 - 40399701
Alignment:
Q  123 caaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatatccaa 191  Q
    ||||| |||| ||||||||||| |||||| | |||||||||||||||||||||||||| |||| |||||    
T  40399769 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaa 40399701  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 567 - 608
Target Start/End: Original strand, 22150622 - 22150663
Alignment:
Q  567 aaagtaaatatgtaagacagaagtatcggtgttggagtataa 608  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  22150622 aaaggaaatatgtaagacagaagtatcggtgtcggagtataa 22150663  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 34287781 - 34287823
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagattggcca 321  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||    
T  34287781 ttctagtgagaggtttgataataaggtcaaattagattggcca 34287823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 9778 - 9828
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagattggccacctccgtt 329  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  9778 ttctggtgagaggtttgagaataaagtcaaattaggttcgccaactccgtt 9828  T

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Target: scaffold0129; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 17874 - 17824
Alignment:
Q  282 tggtgagaggtttgagaataaagtcaaattagattggccacctccgtttca 332  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  17874 tggtgagaggtttgagaataaggtcaaattaaattggccacctccatttca 17824  T

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Target: scaffold0129; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 34270 - 34220
Alignment:
Q  282 tggtgagaggtttgagaataaagtcaaattagattggccacctccgtttca 332  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  34270 tggtgagaggtttgagaataaggtcaaatttgattggccacctccatttca 34220  T

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Target: scaffold0129; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 9596 - 9698
Alignment:
Q  88 cctcttaaatctttggttcaatttagatgcgtacgcaaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatat 187  Q
    |||||||||||||||   | |||||| || ||||  |||| ||||||||  |||||  |||||| | |||||||||||||||| || |||||| ||||||    
T  9596 cctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtatcgtaacaatgtcatat 9695  T
Q  188 cca 190  Q
    |||    
T  9696 cca 9698  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 42630565 - 42630455
Alignment:
Q  81 aaaacttcctcttaaatctttggttcaatttagatgcgtacgcaaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaat 180  Q
    |||||||||||||||||||||| ||| |||| | || || || |||| |||||||||||| || |||||   |||||||||||||||||  || || |||    
T  42630565 aaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtttcgaaagaat 42630466  T
Q  181 ttcatatccaa 191  Q
    ||| |||||||    
T  42630465 ttcttatccaa 42630455  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 42841302 - 42841260
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagattggcca 321  Q
    |||||||||||| ||||| |||||||| |||||||||||||||    
T  42841302 ttctggtgagagatttgaaaataaagttaaattagattggcca 42841260  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 29417528 - 29417496
Alignment:
Q  288 gaggtttgagaataaagtcaaattagattggcc 320  Q
    ||||||||||||||| |||||||||||||||||    
T  29417528 gaggtttgagaataaggtcaaattagattggcc 29417496  T

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Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 17009 - 16972
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagatt 316  Q
    |||||||||||||||||||||||| |||||||||||||    
T  17009 ttctggtgagaggtttgagaataaggtcaaattagatt 16972  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 12651405 - 12651472
Alignment:
Q  124 aaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatatccaa 191  Q
    |||| |||||||||||||||  |||||| | ||||||||||| ||| |||||  ||||||||||||||    
T  12651405 aaataatggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatccaa 12651472  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 18140301 - 18140242
Alignment:
Q  124 aaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttc 183  Q
    |||| |||||| ||||||||| |||||| | ||||||||||||||| ||||| |||||||    
T  18140301 aaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaatttc 18140242  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 12646278 - 12646340
Alignment:
Q  129 atggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatatccaa 191  Q
    |||||||||||||||  |||||| | ||||||||||| ||| |||||  ||||||||||||||    
T  12646278 atggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaatttcatatccaa 12646340  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 31135736 - 31135678
Alignment:
Q  284 gtgagaggtttgagaataaagtcaaattagattggccacctccgtttcacaaggatgac 342  Q
    ||||||||||| ||||||| ||||||||||| |||||||| |  ||||| |||||||||    
T  31135736 gtgagaggtttcagaataaggtcaaattagactggccaccgctatttcaaaaggatgac 31135678  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 608
Target Start/End: Original strand, 3046729 - 3046770
Alignment:
Q  567 aaagtaaatatgtaagacagaagtatcggtgttggagtataa 608  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  3046729 aaaggaaatatgtaagacagaggtatcggtgtcggagtataa 3046770  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 24465718 - 24465771
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagattggccacctccgtttca 332  Q
    ||||||||| | ||||||||||||||| ||||| |||| ||||||||| |||||    
T  24465718 ttctggtgacaagtttgagaataaagtgaaattggatttgccacctccatttca 24465771  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 16920299 - 16920346
Alignment:
Q  279 ttctggtgagaggtttgagaataaagtcaaattagattggccacctcc 326  Q
    |||||||||||||||||||| ||  ||||||||||||||||| |||||    
T  16920299 ttctggtgagaggtttgagattatggtcaaattagattggcctcctcc 16920346  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 44142345 - 44142263
Alignment:
Q  113 gatgcgtacgcaaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatatccaataat 195  Q
    ||||||||||||||| ||||||  | || ||  |||||  | ||||||||| ||||||||||||| |||||||||| ||||||    
T  44142345 gatgcgtacgcaaatcatggtccatcttgtttgaaaactctcatttcatgaccatgtaccgcaaccatttcatatctaataat 44142263  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 7429869 - 7429833
Alignment:
Q  155 atttcatgaacatgtaccgcaacaatttcatatccaa 191  Q
    ||||||||||||| || ||||||||||||||||||||    
T  7429869 atttcatgaacatctatcgcaacaatttcatatccaa 7429833  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 5441565 - 5441634
Alignment:
Q  113 gatgcgtacgcaaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaattt 182  Q
    |||||||||||||||  |||||| | ||||| ||||| | ||||||||||| ||||| |||||| |||||    
T  5441565 gatgcgtacgcaaatcgtggtctatcttatttaaaaatcgttatttcatgagcatgttccgcaaaaattt 5441634  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 5450575 - 5450644
Alignment:
Q  113 gatgcgtacgcaaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaattt 182  Q
    |||||||||||||||  |||||| | ||||| ||||| | ||||||||||| ||||| |||||| |||||    
T  5450575 gatgcgtacgcaaatcgtggtctatcttatttaaaaatcgttatttcatgagcatgttccgcaaaaattt 5450644  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 608
Target Start/End: Original strand, 22205248 - 22205289
Alignment:
Q  567 aaagtaaatatgtaagacagaagtatcggtgttggagtataa 608  Q
    |||| ||||||||||||||||||||||||||| | |||||||    
T  22205248 aaaggaaatatgtaagacagaagtatcggtgtcgaagtataa 22205289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 22229491 - 22229450
Alignment:
Q  567 aaagtaaatatgtaagacagaagtatcggtgttggagtataa 608  Q
    |||| ||||||||||||||||||||||||||| | |||||||    
T  22229491 aaaggaaatatgtaagacagaagtatcggtgtcgaagtataa 22229450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 25627371 - 25627435
Alignment:
Q  124 aaattatggtctcttttattcaaaaacctttatttcatgaacatgtaccgcaacaatttcatatc 188  Q
    |||| ||||||||| |||||  |||||| || |||||||| ||||| |||||| |||||||||||    
T  25627371 aaatcatggtctctcttatttgaaaacccttctttcatgaccatgttccgcaataatttcatatc 25627435  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 29359873 - 29359832
Alignment:
Q  567 aaagtaaatatgtaagacagaagtatcggtgttggagtataa 608  Q
    |||| ||||||||||| ||||||||||||||| |||||||||    
T  29359873 aaagaaaatatgtaagtcagaagtatcggtgtcggagtataa 29359832  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 46502183 - 46502227
Alignment:
Q  282 tggtgagaggtttgagaataaagtcaaattagattggccacctcc 326  Q
    |||||||| |||||||||||  ||||| |||||||||||||||||    
T  46502183 tggtgagacgtttgagaatagtgtcaagttagattggccacctcc 46502227  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 34212 - 34180
Alignment:
Q  285 tgagaggtttgagaataaagtcaaattagattg 317  Q
    ||||||||||||||||||||| |||||||||||    
T  34212 tgagaggtttgagaataaagtaaaattagattg 34180  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 21379386 - 21379306
Alignment:
Q  88 cctcttaaatctttggttcaatttagatgcgtacgcaaattatggtctcttttattcaaaaacctttatttcatgaacatg 168  Q
    |||||||||||||||   | |||| ||||||| || |||| ||||||||| |||||  |||||  ||||||||||||||||    
T  21379386 cctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaacatg 21379306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 34259131 - 34259099
Alignment:
Q  156 tttcatgaacatgtaccgcaacaatttcatatc 188  Q
    |||||||||||||| ||||||||||||||||||    
T  34259131 tttcatgaacatgttccgcaacaatttcatatc 34259099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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