View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7243_low_3 (Length: 556)
Name: NF7243_low_3
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 31263934 - 31264140
Alignment:
| Q |
115 |
gaaaacatcgtctagatactccttatgcgcaacaggtgtaggctcaaccacttatgaggagtttgactcatcgnnnnnnngagtctgatgcctacgtcag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
31263934 |
gaaaacatcgtctagatactccttatgcgcaacaggtgtaggctcaaccacttatgaggagtttgactcatcgtcgttttgagtcagatgcctacgtcag |
31264033 |
T |
|
| Q |
215 |
tcccgtttagggggaggattaactgcatcatttaccttacatacaaagttatgttggctctacctaccgagtagaagcctaccaacgtcgttagatatat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
31264034 |
tcccgtttagggggaggattaactgcatcatttgccttacatacaaagttatgttgactctacctaccgagtcgaagcctaccaacatcgtcagatatat |
31264133 |
T |
|
| Q |
315 |
ctacaca |
321 |
Q |
| |
|
||||||| |
|
|
| T |
31264134 |
ctacaca |
31264140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 396 - 540
Target Start/End: Original strand, 31264215 - 31264359
Alignment:
| Q |
396 |
tattatccattgtggtatttcatttcttaaactacccaaaatgcactactacttaatttaatcttccttccaagtaaaaacaatattctaattcataaac |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264215 |
tattatccattgtggtatttcatttcttaaactacccaaaatgcactactacttaatttaatcttccttccaagtaaaaacaatattctaattcataaac |
31264314 |
T |
|
| Q |
496 |
aactactcaaacaaccatcaattttacaataaaaaatcttataat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31264315 |
aactactcaaacaaccatcaattttacaataaaaaatcttataat |
31264359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 31263831 - 31263868
Alignment:
| Q |
9 |
aatcagaaggcccaccaccgtattccataagattgtca |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31263831 |
aatcagaaggcccaccaccgtattccataagattgtca |
31263868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University