View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7243_low_6 (Length: 482)
Name: NF7243_low_6
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_low_6 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 232218 - 232681
Alignment:
| Q |
18 |
gaaggaatgttgtgccaaggccatctaactaatgatttttaaattttcttaattgcttcttcggatattttttcctgacgtgcaatatatctgttaattg |
117 |
Q |
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|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
232218 |
gaaggaatgttgtgcccaggtcagctaactaatgatttttaaattttcttaattgcttctttggatattttttcctaacgtgcaatatatctgttaattg |
232317 |
T |
|
| Q |
118 |
atgtggttcttaattgtcagttaacaatagttaggtacaaagttcatggtcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaa |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
232318 |
atgtggttcttaattgtcagtcaacaatagttaggtacaaagtccatgttcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaa |
232417 |
T |
|
| Q |
218 |
tgtccaaacttatgttggcaggagtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtccacactatgtagcacctaatttgatgccat |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
232418 |
tgtccaaacttatgttggcaggagtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtccacactatgtagcacctaatttgatgccat |
232517 |
T |
|
| Q |
318 |
tgttgatttctgcaaactagcgacaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaatgttgtttaaggttgaaattacggatggga |
417 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
232518 |
tgttgatttatgcagactagcgacaattgtggttatccatctgatctagaaatttttgttggaaagaaaatgttgtttaaggttgaaattacggatggga |
232617 |
T |
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| Q |
418 |
acttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtccatctcattg |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
232618 |
acttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtcaaactcattg |
232681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 14585157 - 14584694
Alignment:
| Q |
18 |
gaaggaatgttgtgccaaggccatctaactaatgatttttaaattttcttaattgcttcttcggatattttttcctgacgtgcaatatatctgttaattg |
117 |
Q |
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|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
14585157 |
gaaggaatgttgtgcccaggtcagctaactaatgatttttaaattttcttaattgcttctttggatattttttcctaacgtgcaatatatctgttaattg |
14585058 |
T |
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| Q |
118 |
atgtggttcttaattgtcagttaacaatagttaggtacaaagttcatggtcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaa |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14585057 |
atgtggttcttaattgtcagtcaacaatagttaggtacaaagtccatgttcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaa |
14584958 |
T |
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| Q |
218 |
tgtccaaacttatgttggcaggagtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtccacactatgtagcacctaatttgatgccat |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14584957 |
tgtccaaacttatgttggcaggagtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtccacactatgtagcacctaatttgatgccat |
14584858 |
T |
|
| Q |
318 |
tgttgatttctgcaaactagcgacaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaatgttgtttaaggttgaaattacggatggga |
417 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14584857 |
tgttgatttatgcagactagcgacaattgtggttatccatctgatctagaaatttttgttggaaagaaaatgttgtttaaggttgaaattacggatggga |
14584758 |
T |
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| Q |
418 |
acttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtccatctcattg |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
14584757 |
acttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtcaaactcattg |
14584694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 373 - 458
Target Start/End: Complemental strand, 49825356 - 49825272
Alignment:
| Q |
373 |
ttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggac |
458 |
Q |
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|||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||| ||| ||||||||||||| |
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| T |
49825356 |
ttgttggaaaacaaatgctatttaaggttgaaattacggatgggaacttaatgcata-attggcgcaactatgctgtcaaaaggac |
49825272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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