View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7243_low_8 (Length: 416)
Name: NF7243_low_8
Description: NF7243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7243_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 33 - 404
Target Start/End: Original strand, 23176796 - 23177187
Alignment:
| Q |
33 |
acatgaaatagagaatttaattctatgaaatagagaattttatctggaagggatattcattggttacatattcatttaatggctaatttattcaatttct |
132 |
Q |
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| T |
23176796 |
acatgaaatagagaatttaattatatgaaatagagaattttatcaggaagggatattcattggttacatattcatttaatggctaatttattcaatttct |
23176895 |
T |
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| Q |
133 |
ttagttcatacaaaagtcaattaatggttacatattcatttaatgg--------------------ttgtttatttatggtcgaatgttgaccatattcc |
212 |
Q |
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| T |
23176896 |
ttagttcatacaaaagtcaattaatggttacatattcatttaatggttgtttatttatggtcatggttgtttatttatggtcgaatgttgaccatattcc |
23176995 |
T |
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| Q |
213 |
ctgcatacatctgggttactttgtggagtccaatttagctcagaagctctatctggttggaagttttagctgtggcgaccagtgttgattgtgactggca |
312 |
Q |
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| T |
23176996 |
ctgcatacatctgggttactttgtggagtccaattcagctcagaagctctatctggttggaagttttagcggtggcgaccagcgttgattgtgactggca |
23177095 |
T |
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| Q |
313 |
aatgaaccttgtgtattcatgaacttttatacttctcccgaataacataatggctatttctttcataagcatgtgatttagggttatgatgt |
404 |
Q |
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| T |
23177096 |
aatgaaccttgtgtattcatgaacctttatacttctcccgaataacataatggctatttctttcataagcatgtgatttagggttatgatgt |
23177187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 23176618 - 23176652
Alignment:
| Q |
12 |
acagggccccaactttcgattacatgaaatagaga |
46 |
Q |
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| T |
23176618 |
acagcgccccaactttcgattacatgaaatagaga |
23176652 |
T |
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