View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7244_high_3 (Length: 390)

Name: NF7244_high_3
Description: NF7244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7244_high_3
NF7244_high_3
[»] chr7 (4 HSPs)
chr7 (34-365)||(27272767-27273097)
chr7 (226-356)||(27282495-27282624)
chr7 (253-293)||(27251241-27251281)
chr7 (156-205)||(27282622-27282671)
[»] chr3 (2 HSPs)
chr3 (54-156)||(6077828-6077932)
chr3 (59-116)||(9765844-9765900)
[»] chr6 (1 HSPs)
chr6 (34-91)||(13550309-13550366)
[»] chr8 (1 HSPs)
chr8 (39-152)||(43651575-43651685)
[»] chr5 (1 HSPs)
chr5 (39-152)||(21114784-21114894)
[»] chr4 (1 HSPs)
chr4 (41-156)||(39482402-39482516)
[»] chr2 (1 HSPs)
chr2 (53-152)||(24863595-24863692)
[»] chr1 (1 HSPs)
chr1 (252-315)||(14888952-14889016)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 34 - 365
Target Start/End: Complemental strand, 27273097 - 27272767
Alignment:
Q  34 ccaatgaaaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttcta 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  27273097 ccaatgaaaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacagataaagacgaaaacatgacagggtttcatcaagtttcta 27272998  T
Q  134 tctttcttatcccttttatcatctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaattnnnnnnnnntttgctggtccattataat 233  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||           || ||||||||||||||    
T  27272997 tctttcttatcccttttatcatctctcaaaggaataatgaaaatgcttgagaaaatcaaacaaggcacaattaaaaaaaaa-atgttggtccattataat 27272899  T
Q  234 gtaacccgacccccttttgatcttcttcccactagataatccgattaagattgttaatctcttaatttgtccctattttataatctattaaatattattc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27272898 gtaacccgacccccttttgatcttcttcccactagataatccgattaagattgttaatctcttaatttgtcactattttataatctattaaatattattc 27272799  T
Q  334 tgaatagaattaacttggtgcaacacacaggt 365  Q
    | ||||||||||||||||||||||||||||||    
T  27272798 taaatagaattaacttggtgcaacacacaggt 27272767  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 27282624 - 27282495
Alignment:
Q  226 attataatgtaacccgacccccttttgatcttcttcccactagataatccgattaagattgttaatctcttaatttgtccctattttataatctattaaa 325  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||| |||||||||| |||||||||    
T  27282624 attataatgtaaccc-acccccttttgatcttcttccctctagattatccgattaagattgttaatcttttattttgtcactattttatattctattaaa 27282526  T
Q  326 tattattctgaatagaattaacttggtgcaa 356  Q
     |||  ||| |||||||||||||| ||||||    
T  27282525 aattgctctcaatagaattaacttcgtgcaa 27282495  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 27251281 - 27251241
Alignment:
Q  253 atcttcttcccactagataatccgattaagattgttaatct 293  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  27251281 atcttcttccctctagacaatccgattaagattgttaatct 27251241  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 27282671 - 27282622
Alignment:
Q  156 ctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaatt 205  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||| ||||||    
T  27282671 ctctcaaaggaataatgaaaatgttagagaaacccaaacaaggtacaatt 27282622  T

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Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 6077828 - 6077932
Alignment:
Q  54 gacgttccaaattacaattgcaagag--acgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatccctttta 151  Q
    ||||||||||||||||||||||||||  |||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  6077828 gacgttccaaattacaattgcaagagagacgtttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttccctttta 6077927  T
Q  152 tcatc 156  Q
    |||||    
T  6077928 tcatc 6077932  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 9765844 - 9765900
Alignment:
Q  59 tccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagg 116  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||| |||| |||||||||    
T  9765844 tccaaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgacagg 9765900  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 13550366 - 13550309
Alignment:
Q  34 ccaatgaaaatgggagtatggacgttccaaattacaattgcaagagacgtttcatcca 91  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  13550366 ccaatgaaaatgggagcagggacgttccaaattacaattacaagagacgtttcatcca 13550309  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 43651685 - 43651575
Alignment:
Q  39 gaaaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatcttt 138  Q
    ||||||||||| | |||||| |||||||||||||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| |||    
T  43651685 gaaaatgggagcagggacgt-ccaaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatattt 43651589  T
Q  139 cttatcccttttat 152  Q
    |||||| |||||||    
T  43651588 cttatctcttttat 43651575  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 21114894 - 21114784
Alignment:
Q  39 gaaaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatcttt 138  Q
    ||||||||||| | |||||| |||||||||||||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| |||    
T  21114894 gaaaatgggagcagggacgt-ccaaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatattt 21114798  T
Q  139 cttatcccttttat 152  Q
    |||||| |||||||    
T  21114797 cttatctcttttat 21114784  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 39482516 - 39482402
Alignment:
Q  41 aaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttct 140  Q
    ||||||||| | ||||||||||||||||||||| ||||||| ||||||| | |  || | | | || ||||||||||||| ||||| | || || ||| |    
T  39482516 aaatgggagcagggacgttccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttat 39482418  T
Q  141 tatcccttttatcatc 156  Q
    |||| |||||||||||    
T  39482417 tatctcttttatcatc 39482402  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 24863692 - 24863595
Alignment:
Q  53 ggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 152  Q
    |||||| |||||| ||||||||||||||| ||| ||||| | ||| ||| |||| ||||||| |||||||||||   ||||| ||||||||| |||||||    
T  24863692 ggacgtcccaaataacaattgcaagagacatttaatccaaagatagagaggaaa-catgaca-ggtttcaccaaagatctatatttcttatctcttttat 24863595  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 14888952 - 14889016
Alignment:
Q  252 gatcttcttcccactagataatccgatt-aagattgttaatctcttaatttgtccctattttata 315  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||  || ||||||  |||||||||    
T  14888952 gatcttctaccctctagataatccgattaaagattgttaatcttatattttgtcattattttata 14889016  T

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