View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7244_low_2 (Length: 623)
Name: NF7244_low_2
Description: NF7244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7244_low_2 |
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| [»] scaffold0061 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 343 - 605
Target Start/End: Original strand, 27273732 - 27273994
Alignment:
| Q |
343 |
atacagtttgaagtaatgacgtaaatcactaaccatttaccacattttcatgttctccaatttgaaccctcttttaattccttgccaaacagaaaactga |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
27273732 |
atacagtttgaagtaatgacgtaaatcactaaccatttaccacagtttcatgttctccaatttgaaccctctcttaattcctttccaaacagaaaactga |
27273831 |
T |
|
| Q |
443 |
aaattggaagatagtcagatagataagtactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgtt |
542 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27273832 |
aaaatggaagatagtcagatagataagtactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgtt |
27273931 |
T |
|
| Q |
543 |
aaaatcgttgcagcgtcgtaatgtgggtttacacacaattgtggcctgatgcggtcatggaag |
605 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27273932 |
aaaatcgttgcagcatcgtaatgtgggtttacacacaattgtggcctgatgcggtcatggaag |
27273994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 27273387 - 27273643
Alignment:
| Q |
1 |
aagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctacttcg---tcgatagttatt |
97 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |
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| T |
27273387 |
aagaaaaagaattacatcggtatatcattatagagtgcgacgtcatgttgttaactaaaactaaaatacaaagaactctacttcgatgttgatagttatt |
27273486 |
T |
|
| Q |
98 |
cgttgtagttgttgggagcaagcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctct |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27273487 |
cgttgtagttgttgggagcaagcatacgttacacatttgagaattgcaataatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctct |
27273586 |
T |
|
| Q |
198 |
caaagccatgttatgctctgcttgttatgtctaacctaagtaaataaacgcttgtat |
254 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
27273587 |
caaagccatgttatgctctacttgttatgtctaacctaaataaataaacgcttgtat |
27273643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 342 - 605
Target Start/End: Original strand, 638 - 900
Alignment:
| Q |
342 |
catacagtttgaagtaatgacgtaaatcactaaccatttaccacattttcatgttctccaatttgaaccctcttttaattccttgccaaacagaaaactg |
441 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
638 |
catacagtttgaagtaaagacgtaaatcacaaaccatttaccactgtttcatgttctccaatttgaaccctctcttaattcctt-ccaaaaagaaaactg |
736 |
T |
|
| Q |
442 |
aaaattggaagatagtcagatagataagtactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgt |
541 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
737 |
aaaaatggaagatagttagatagataaatactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccaactatgt |
836 |
T |
|
| Q |
542 |
taaaatcgttgcagcgtcgtaatgtgggtttacacacaattgtggcctgatgcggtcatggaag |
605 |
Q |
| |
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| T |
837 |
tagaatcgttgcagcgtcgtaatgtgggtttacacacaattgtggcctgatgcgttcatggaag |
900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 342 - 605
Target Start/End: Original strand, 6149 - 6411
Alignment:
| Q |
342 |
catacagtttgaagtaatgacgtaaatcactaaccatttaccacattttcatgttctccaatttgaaccctcttttaattccttgccaaacagaaaactg |
441 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
6149 |
catacagtttgaagtaaagacgtaaatcacaaaccatttaccactgtttcatgttctccaatttgaaccctctcttaattcctt-ccaaaaagaaaactg |
6247 |
T |
|
| Q |
442 |
aaaattggaagatagtcagatagataagtactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgt |
541 |
Q |
| |
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|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6248 |
aaaaatggaagatagttagatagataaatactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccaactatgt |
6347 |
T |
|
| Q |
542 |
taaaatcgttgcagcgtcgtaatgtgggtttacacacaattgtggcctgatgcggtcatggaag |
605 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6348 |
tagaatcgttgcagcgtcgtaatgtgggtttacacacaattgtggcctgatgcgttcatggaag |
6411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 291 - 547
Alignment:
| Q |
1 |
aagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctacttcg---tcgatagttatt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
291 |
aagaaaaagagttacatcggtatatcattatagagtgcgacgtcatgttgttaactgaaactaaaatacaaagaactctacttggatgtcaatagttatt |
390 |
T |
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| Q |
98 |
cgttgtagttgttgggagcaagcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctct |
197 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
391 |
cgttgtagttgttgggagcaagcatacgtttcacatttgaaaattgcaataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctct |
490 |
T |
|
| Q |
198 |
caaagccatgttatgctctgcttgttatgtctaacctaagtaaataaacgcttgtat |
254 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
491 |
caaagccatgttatgctctacttgttatgtctaacctaaataaataaacgcttgtat |
547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 5802 - 6058
Alignment:
| Q |
1 |
aagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctacttcg---tcgatagttatt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
5802 |
aagaaaaagagttacatcggtatatcattatagagtgcgacgtcatgttgttaactgaaactaaaatacaaagaactctacttggatgtcaatagttatt |
5901 |
T |
|
| Q |
98 |
cgttgtagttgttgggagcaagcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctct |
197 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5902 |
cgttgtagttgttgggagcaagcatacgtttcacatttgaaaattgcaataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctct |
6001 |
T |
|
| Q |
198 |
caaagccatgttatgctctgcttgttatgtctaacctaagtaaataaacgcttgtat |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6002 |
caaagccatgttatgctctacttgttatgtctaacctaaataaataaacgcttgtat |
6058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 342 - 593
Target Start/End: Original strand, 13551005 - 13551247
Alignment:
| Q |
342 |
catacagtttgaagtaatgacgtaaatcactaaccatttaccacattttcatgttctccaatttgaaccctcttttaattccttgccaaacagaaaactg |
441 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||| ||||| ||||||||| |
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| T |
13551005 |
catatagtttaaagtaatgacgtaaatcactaaccatttaccacagtttcatgtcctccaatttgaaccatc--------cctttccaaaaagaaaactg |
13551096 |
T |
|
| Q |
442 |
aaaattggaagatagtcagatagataagtactttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgt |
541 |
Q |
| |
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|||| || |||||||| |||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
13551097 |
aaaaatgtaagatagttagatagataaatactttgtatgatcactacatcggat-gctgcatcttaactcggtgtgatgtggttcttgcatcaactatgt |
13551195 |
T |
|
| Q |
542 |
taaaatcgttgcagcgtcgtaatgtgggtttacacacaattgtggcctgatg |
593 |
Q |
| |
|
|| ||||||||||||||| |||| ||| |||||||||||||||||||||||| |
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|
| T |
13551196 |
tagaatcgttgcagcgtcttaatatggttttacacacaattgtggcctgatg |
13551247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 13550682 - 13550860
Alignment:
| Q |
44 |
catgttgttaactgaaactaaaatacaaagaactctacttc---gtcgatagttattcgttgtagttgttgggagcaa-gcatacgttacacatttgaaa |
139 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||| ||| || ||||||| ||||||||||||||||||| |||| ||||||||||||||| |
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| T |
13550682 |
catgttgttaactgaaactaaaatacgaagaactccgcttcaatgtcaatcgttattc-ttgtagttgttgggagcaaagcatctgttacacatttgaaa |
13550780 |
T |
|
| Q |
140 |
attgcaagaatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctctcaaagc---catgttatgctct |
216 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||| |||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
13550781 |
attgcaataatcaaattaaatcatgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctct |
13550860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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