View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7245_high_11 (Length: 228)
Name: NF7245_high_11
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7245_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 10841159 - 10840956
Alignment:
| Q |
12 |
tcatcaattacttcatgaagcattttcaaggcttataacaaagtacaccaatgtgtatttgattgtagctggttctggaccatgggagaataggtataag |
111 |
Q |
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| T |
10841159 |
tcatccattacttcatgaagcattttcaaggcttataacaaagtacaccaatgtgtatttgattgtagctggttctggaccatgggagaataggtataag |
10841060 |
T |
|
| Q |
112 |
gatatcgggaaccaagttcttgttcttggatcaatgaatccttctatgttaagagcattctataatgctattgatatttttgttaatcctacattaagac |
211 |
Q |
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| T |
10841059 |
gatatcgggaaccaagttcttgttcttggatcaatgaatccttctatgttaagagcattctataatgctattgatatttttgttaatcctacattaagac |
10840960 |
T |
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| Q |
212 |
caca |
215 |
Q |
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|||| |
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| T |
10840959 |
caca |
10840956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 30346493 - 30346671
Alignment:
| Q |
22 |
cttcatgaagcattttcaaggcttataacaaagtacaccaatgtgtatttgattgtagctggttctggaccatgggagaataggtataaggatatcggga |
121 |
Q |
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||||||||||| | ||||| ||| |||||||| || | ||||| ||||||||| | ||||||||||||||||||| ||| ||||| |||||| | || | |
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| T |
30346493 |
cttcatgaagcgtattcaaagctaataacaaaacaccctaatgtttatttgattattgctggttctggaccatgggggaacaggtacaaggatttaggaa |
30346592 |
T |
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| Q |
122 |
accaagttcttgttcttggatcaatgaatccttctatgttaagagcattctataatgctattgatatttttgttaatcc |
200 |
Q |
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| T |
30346593 |
accaagttcttgttctaggatcaatgagtccttccatgttgaaagcattttataatgctattgacattttcgtcaatcc |
30346671 |
T |
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