View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7245_high_2 (Length: 417)
Name: NF7245_high_2
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7245_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 209 - 400
Target Start/End: Complemental strand, 11414731 - 11414540
Alignment:
| Q |
209 |
gtggtatactataattttaatagagaatcaatttatgagaaatatataccatggttttgttctgattggttcatgttgagttcattcatttaattgatgt |
308 |
Q |
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| T |
11414731 |
gtggtatactataattttaatatagaatcaatttatgagaaatatataccatggttttgttctgattggttcatgttgagttcattcatttaattgatgt |
11414632 |
T |
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| Q |
309 |
ccagcaatgaggttatattatcatttgttaagttatttaattgttcctgaattggattgttggaatatttatccatcatcatttattgtatg |
400 |
Q |
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| T |
11414631 |
ccagcaatgaggttatattatcatttgttaagttatttaattgttgctgaattggattgttggaatatttatccatcatcatttattctatg |
11414540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 11414939 - 11414791
Alignment:
| Q |
1 |
cgtagaagattattaatgttaatagtaaaaatttacttgaataatgctaagtttggcacctaaacttttatttnnnnnnntaaaattaacgatgctcttt |
100 |
Q |
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| T |
11414939 |
cgtagaagattattaatgttaatagtaaaaatttacttgaataatgctaagtttgacacctaaacttttattaaaaaaaataaaattaacgatgctcttt |
11414840 |
T |
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| Q |
101 |
tatttcttccaaatttgagtggtgatatgatcatattgtttgaaagaag |
149 |
Q |
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| T |
11414839 |
tttttcttccaaatttgagtggtgatatgatcatattgtttgaaagaag |
11414791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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