View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7245_high_5 (Length: 390)
Name: NF7245_high_5
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7245_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 27638443 - 27638137
Alignment:
| Q |
1 |
aatattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27638443 |
aatattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattctcatgttcatgcttcaaacgtcttaatttc |
27638344 |
T |
|
| Q |
101 |
ccctgcccttgctgctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaagg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27638343 |
ccctgcccttgctgctcttttcgagaaacaaatgcaggaaacacacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaga |
27638244 |
T |
|
| Q |
201 |
ctcattttaaaagaga----gagaatgactcataaaataatatattttaataaaacgagtcttaatctctttgaaatgaaccttcaaagaggctcttgat |
296 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
27638243 |
cccattttaaaagagagagagagaatggctcataaaataatatattttattaaaacgagtcttaatctctttgagatgaacctttcaagaggctcttgat |
27638144 |
T |
|
| Q |
297 |
tcatgaa |
303 |
Q |
| |
|
||||||| |
|
|
| T |
27638143 |
tcatgaa |
27638137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 37354626 - 37354328
Alignment:
| Q |
2 |
atattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttc |
101 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
37354626 |
atatcatcaacaacaacaaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttc |
37354527 |
T |
|
| Q |
102 |
cctgcccttgctgctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggc |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37354526 |
cc-gcccttgctgctctttttgagaaacaaatgcaggaaacacaccagctcatcaatatacatgttaaaatttatatgtatcatgagttgggatcaaggt |
37354428 |
T |
|
| Q |
202 |
tcattttaaaagagagagaatgactcataaaataatatattttaataaaacgagtcttaatctctttgaaatgaaccttcaaagaggctcttgattcatg |
301 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||||| ||||| ||||| ||||||| |
|
|
| T |
37354427 |
ccattttaaa--tgagagaatgactcataaaataatatatttttataaaacgagtcttaatctctctgagataaacctttcaagagactcttaattcatg |
37354330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 37366600 - 37366302
Alignment:
| Q |
2 |
atattatcaacaacaaccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttc |
101 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
37366600 |
atatcatcaacaacaacaaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttc |
37366501 |
T |
|
| Q |
102 |
cctgcccttgctgctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggc |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37366500 |
cc-gcccttgctgctctttttgagaaacaaatgcaggaaacacaccagctcatcaatatacatgttaaaatttatatgtatcatgagttgggatcaaggt |
37366402 |
T |
|
| Q |
202 |
tcattttaaaagagagagaatgactcataaaataatatattttaataaaacgagtcttaatctctttgaaatgaaccttcaaagaggctcttgattcatg |
301 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||||| ||||| ||||| ||||||| |
|
|
| T |
37366401 |
ccattttaaa--tgagagaatgactcataaaataatatatttttataaaacgagtcttaatctctctgagataaacctttcaagagactcttaattcatg |
37366304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 12242076 - 12242243
Alignment:
| Q |
18 |
ccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctc |
117 |
Q |
| |
|
||||||||| ||||||||||| |||| || || || |||||| | |||| | |||||||||||||||| | |||||| || || | ||| | ||| |
|
|
| T |
12242076 |
ccaccacaacatcaacaacaggggcaaggccatcttcttcccacttccaatcctcatgttcatgcttcaagcatcttaagttatccaacttttgattctc |
12242175 |
T |
|
| Q |
118 |
tttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcat |
185 |
Q |
| |
|
|||||||||||||| | |||| ||| || || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
12242176 |
tttttgagaaacaagcgaaggagacaaaccagatcatcaataatcaggttaaaatttatatgtatcat |
12242243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 12291876 - 12292037
Alignment:
| Q |
24 |
caaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctctttttg |
123 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||| || ||||| | ||||| || ||||||| | |||||| || ||| || ||| | |||| |||| |
|
|
| T |
12291876 |
caaaatcaacaactgtggcatggccatgttgttccctttttcaatcctcatgtccaagcttcaagcatcttaagttatccttcctttgattctctatttg |
12291975 |
T |
|
| Q |
124 |
agaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcat |
185 |
Q |
| |
|
|||||||| | ||| ||| || || ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
12291976 |
agaaacaagtcatggagacaaaccagttcatcaataatcaggttaatatttatatgtatcat |
12292037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 34720980 - 34720866
Alignment:
| Q |
120 |
tttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggctcattttaaaagagagag |
219 |
Q |
| |
|
|||||||||||| |||||||||| || | ||||||||||||||||| |||||| ||||||| || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
34720980 |
tttgagaaacaagggcaggaaacagaccaactcatcaatatacaggtaaaaattgatatgtaacaagagttacgatcaaggtccatttcgaaagagaga- |
34720882 |
T |
|
| Q |
220 |
aatgactcataaaataa |
236 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
34720881 |
aat-actcataaaataa |
34720866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 27912416 - 27912258
Alignment:
| Q |
18 |
ccaccacaaaatcaacaacagtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctc |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||| || |||||||| || | ||| | |||||||||||||||| | |||||| || ||| || ||| | ||| |
|
|
| T |
27912416 |
ccacaacaacatcaacaacagtggcagggtcatattgttccctttttgaatcctcatgttcatgcttcaagcatcttaagttatcctacctttgattctc |
27912317 |
T |
|
| Q |
118 |
tttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttat |
176 |
Q |
| |
|
| ||| |||||||| | |||| ||| || | ||||||||| ||||||||||||||| |
|
|
| T |
27912316 |
tatttcagaaacaagttaaggagacaaaccaattcatcaataatcaggttaaaatttat |
27912258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University