View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7245_low_1 (Length: 886)
Name: NF7245_low_1
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7245_low_1 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 607; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 7 - 886
Target Start/End: Original strand, 23581870 - 23582737
Alignment:
| Q |
7 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
106 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
23581870 |
atggacatcgccgattttaagcacctctggtcatcggtattatgttttattttttgatgattattatgattttttgtggacgttccctataaatcacaaa |
23581969 |
T |
|
| Q |
107 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23581970 |
tctcaagtttttgaaatgtttactacactttctaatcaaattcacacacaattttcgcaaactatcaaatgttttcaatgtgataaagggcgtgaataca |
23582069 |
T |
|
| Q |
207 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
23582070 |
acaatacattgtttcataaatattgtgttgataatggtcttattttccgtttctcttgtcctcacacttcatctcaaaatggcaaagcggaaagtaaaat |
23582169 |
T |
|
| Q |
307 |
acgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23582170 |
acgcaccattaacaacatgattcgcactcttcttgctcattcgtccgttcctacctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
23582269 |
T |
|
| Q |
407 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatattcgtgatccctcctacacacatcttcgtgtctttggttgtctttgtt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
23582270 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatcattgtgatccctcctacacacattttcgtgtctttggttgtgtttgtt |
23582369 |
T |
|
| Q |
507 |
atcctttgcatccttccactatcattaacaaactgcaaccacgctcaaccccgtgtgtcttcttagggtatcccactaatcacagaggttacagatgttt |
606 |
Q |
| |
|
|||| || ||| |||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
23582370 |
atcccctgattccatccattatcatcaacaaaccgcaaccacgctcgaccccgtgtgtcttcttagggtatccaattaatcacagaggttacaaatgttt |
23582469 |
T |
|
| Q |
607 |
tgatttgtcgcacagaaagatcatcgtttcccgacatgttatatttgatgagacacagtttccctttgcccacatgccttccctacctctcatctcctat |
706 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23582470 |
tgatttgtcccatagaaagatcatcgtttcccgacatgtcatatttgatgagacacagtttcccgttgcccacatgccttccctacctctcatctcttat |
23582569 |
T |
|
| Q |
707 |
gattgttttactgatgacctacacccatctattatccatcaatggaccaatcccaccttaaaacctctttccaatgaccttcctagtccgccacctccta |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||| |
|
|
| T |
23582570 |
gattgttttactgatgacctacacccatctattatccatcaatggaccaatcccaccttgaaacct------------cttcccagtccgccaactccta |
23582657 |
T |
|
| Q |
807 |
tacctgaccctccgtctacctcatcggtcggaccacacacacctgatacctccacatcatctacaccattggcccaacct |
886 |
Q |
| |
|
||||| |||||| |||||||| || |||||| || |||| ||||||||| ||||| |||||| |||| |||||||| |
|
|
| T |
23582658 |
tacctaaccctctacctacctcactggccggaccgcatacacttgatacctctccatcacctacacaattgccccaacct |
23582737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 218 - 399
Target Start/End: Complemental strand, 40272712 - 40272531
Alignment:
| Q |
218 |
tttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccatta |
317 |
Q |
| |
|
||||| |||||||| |||||| |||| ||| |||| |||||||||||||| |||| || || |||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
40272712 |
tttcaaaaatattgcgctgatcatggccttgtttttcgtttctcttgtccccacacatcctcacaaaatgggaaagcggaacgaaaaataagaaccatta |
40272613 |
T |
|
| Q |
318 |
acaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatct |
399 |
Q |
| |
|
| || ||||| || | | | || || ||||| |||||||| || ||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
40272612 |
ataatatgatacgtattatgctagctcattcttctgttcccccgtcattttggcatcatgctattcacatggcaacttatct |
40272531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 7233693 - 7233635
Alignment:
| Q |
251 |
ttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacg |
309 |
Q |
| |
|
|||||||| |||||||| |||||||| | |||||||||||||| |||||| ||||||| |
|
|
| T |
7233693 |
ttccgtttttcttgtccacacacttcaccacaaaatggcaaagctgaacgtaaaatacg |
7233635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 36038966 - 36039012
Alignment:
| Q |
254 |
cgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacg |
300 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
36038966 |
cgtttctcgtgtccttatacttcttctcaaaatggcaaagctgaacg |
36039012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 7 - 865
Target Start/End: Complemental strand, 48101916 - 48101058
Alignment:
| Q |
7 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
106 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
48101916 |
atggacttcaccgattttaagtacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacattccctataagtaacaaa |
48101817 |
T |
|
| Q |
107 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
206 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48101816 |
tcacaagtttttgaaatgttcacattactttccaatcaaattcacacacaattttctcaaactgtcaaatgttttcaatgtgataatgggcgtgaatata |
48101717 |
T |
|
| Q |
207 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
306 |
Q |
| |
|
| ||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
48101716 |
ataatacatcatttcataagtattgtgatgataatggtcttgttttccgtttctcttgtcctcatacttcatctcaaaatggcaaagcggaacgtaaaat |
48101617 |
T |
|
| Q |
307 |
acgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
406 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
48101616 |
acgcaccattaacaacatgattcgtactcttctcgctcattcgtctgtacctccctcattttggcatcatgctcttcaaatggctacttaccttcttaat |
48101517 |
T |
|
| Q |
407 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatattcgtgatccctcctacacacatcttcgtgtctttggttgtctttgtt |
506 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
48101516 |
attcttcctcgaaagaatttgtcaaatcactctcctactcaacttttgtatcatcgtgatccctcctacacacatcttcgcgtttttggttgtctttgtt |
48101417 |
T |
|
| Q |
507 |
atcctttgcatccttccactatcattaacaaactgcaaccacgctcaaccccgtgtgtcttcttagggtatcccactaatcacagaggttacagatgttt |
606 |
Q |
| |
|
|||| || ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
48101416 |
atcccctgtttccatccactatcattaacaaactagaaccacgctcgaccccgtgtgtcttcttagggtatcccactaatcacagaggatacaaatgttt |
48101317 |
T |
|
| Q |
607 |
tgatttgtcgcacagaaagatcatcgtttcccgacatgttatatttgatgagacacagtttccctttgcccacatgccttccctacctctcatctcctat |
706 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
48101316 |
tgatttgtcgcacagaaagatcattatctcccggcatgtcatatttgatgagacacaatttccctttgcccacatgccttccctacctcccaccgcctat |
48101217 |
T |
|
| Q |
707 |
gattgttttactgatgacctacacccatctattatccatcaatggaccaatcccaccttaaaacctctttccaatgaccttcctagtccgccacctccta |
806 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||| | |||||||||| ||||| ||||||||| |
|
|
| T |
48101216 |
gactgtttcactgatgacctacacccatctattatccatcagtggacgaaccccaccttgcaacctctacctcatgaccttcccagtccatcacctccta |
48101117 |
T |
|
| Q |
807 |
tacctgaccctccgtctacctcatcggtcggaccacacacacctgatacctccacatca |
865 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||| |
|
|
| T |
48101116 |
tacctgaccctccgtctacctcacgagtcggaccacatacacctggaacctcctcatca |
48101058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33284999 - 33285085
Alignment:
| Q |
7 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccc |
93 |
Q |
| |
|
||||||||| |||||||||||| | | ||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||| |
|
|
| T |
33284999 |
atggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccc |
33285085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 34011716 - 34011797
Alignment:
| Q |
249 |
ttttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcg |
330 |
Q |
| |
|
|||| ||||| |||||||||||||| || ||||||||||| ||| | ||||| ||||||| |||||||||| || ||||| |
|
|
| T |
34011716 |
tttttcgtttgtcttgtccttacacatcttctcaaaatggtaaatctgaacgaaaaatacggtccattaacaatattattcg |
34011797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 7 - 865
Target Start/End: Complemental strand, 9934634 - 9933776
Alignment:
| Q |
7 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
106 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
9934634 |
atggacttcaccgattttaagtacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacattccctataagtaacaaa |
9934535 |
T |
|
| Q |
107 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
206 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9934534 |
tcacaagtttttgaaatgttcacattactttccaatcaaattcacacacaattttctcaaactgtcaaatgttttcaatgtgataatgggcgtgaatata |
9934435 |
T |
|
| Q |
207 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
306 |
Q |
| |
|
| ||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9934434 |
ataatacatcatttcataagtattgtgatgataatggtcttgttttccgtttctcttgtcctcatacttcatctcaaaatggcaaagcggaacgtaaaat |
9934335 |
T |
|
| Q |
307 |
acgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaat |
406 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9934334 |
acgcaccattaacaacatgattcgtactcttctcgctcattcgtctgtacctccctcattttggcatcatgctcttcaaatggctacttaccttcttaat |
9934235 |
T |
|
| Q |
407 |
atccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatattcgtgatccctcctacacacatcttcgtgtctttggttgtctttgtt |
506 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
9934234 |
attcttcctcgaaagaatttgtcaaatcactctcctactcaacttttgtatcatcgtgatccctcctacacacatcttcgcgtttttggttgtctttgtt |
9934135 |
T |
|
| Q |
507 |
atcctttgcatccttccactatcattaacaaactgcaaccacgctcaaccccgtgtgtcttcttagggtatcccactaatcacagaggttacagatgttt |
606 |
Q |
| |
|
|||| || ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
9934134 |
atcccctgtttccatccactatcattaacaaactagaaccacgctcgaccccgtgtgtcttcttagggtatcccactaatcacagaggatacaaatgttt |
9934035 |
T |
|
| Q |
607 |
tgatttgtcgcacagaaagatcatcgtttcccgacatgttatatttgatgagacacagtttccctttgcccacatgccttccctacctctcatctcctat |
706 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
9934034 |
tgatttgtcgcacagaaagatcattatctcccggcatgtcatatttgatgagacacaatttccctttgcccacatgccttccctacctcccaccgcctat |
9933935 |
T |
|
| Q |
707 |
gattgttttactgatgacctacacccatctattatccatcaatggaccaatcccaccttaaaacctctttccaatgaccttcctagtccgccacctccta |
806 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||| | |||||||||| ||||| ||||||||| |
|
|
| T |
9933934 |
gactgtttcactgatgacctacacccatctattatccatcagtggacgaaccccaccttgcaacctctacctcatgaccttcccagtccatcacctccta |
9933835 |
T |
|
| Q |
807 |
tacctgaccctccgtctacctcatcggtcggaccacacacacctgatacctccacatca |
865 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||| |
|
|
| T |
9933834 |
tacctgaccctccgtctacctcacgagtcggaccacatacacctggaacctcctcatca |
9933776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 225 - 414
Target Start/End: Original strand, 45032606 - 45032795
Alignment:
| Q |
225 |
aatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacat |
324 |
Q |
| |
|
|||||||| || |||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || || |
|
|
| T |
45032606 |
aatattgtactactaatggccttatttttcgcttctcttgccctcacacatcctcccaaaatggaaaagcggaacgaaaaataagaaccattaataatat |
45032705 |
T |
|
| Q |
325 |
gattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
414 |
Q |
| |
|
|||||||||| | || || || || |||||||| || ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
45032706 |
gattcgcactatgctagctcactcttctgttcccccacaattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
45032795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 414
Target Start/End: Original strand, 45027771 - 45027947
Alignment:
| Q |
238 |
taatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactctt |
337 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || |||||||||||| | |
|
|
| T |
45027771 |
taatggccttatttttcgcttctcttgccctcacacatcctcccaaaatggtaaagcggaacgaaaaataagaaccattaataatatgattcgcactatg |
45027870 |
T |
|
| Q |
338 |
ctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
414 |
Q |
| |
|
|| || || || |||||||| || ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
45027871 |
ctagctcactcttctgttcccccacaattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
45027947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 672
Target Start/End: Original strand, 45027994 - 45028205
Alignment:
| Q |
461 |
cgtgatccctcctacacacatcttcgtgtctttggttgtctttgttatcctttgcatccttccactatcattaacaaactgcaaccacgctcaaccccgt |
560 |
Q |
| |
|
||||||||| |||||||||| | || |||||||||||| | |||||||| || | || || ||| |||| | ||| | ||||| || || || |||| |
|
|
| T |
45027994 |
cgtgatcccagctacacacatttacgagtctttggttgtttgtgttatccattactcccatcacctaccattcataaattacaaccccgttctactccgt |
45028093 |
T |
|
| Q |
561 |
gtgtcttcttagggtatcccactaatcacagaggttacagatgttttgatttgtcgcacagaaagatcatcgtttcccgacatgttatatttgatgagac |
660 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||| |||||||||||||| |||||||| | || |||| | |||||||| |||||||| || |
|
|
| T |
45028094 |
gtgtcttcttaggttatcccctgaatcatagaggttacaagtgttttgatttgtctaacagaaagttaataatttcgaggcatgttatctttgatgaaac |
45028193 |
T |
|
| Q |
661 |
acagtttccctt |
672 |
Q |
| |
|
|| |||||||| |
|
|
| T |
45028194 |
tcaatttccctt |
45028205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 238 - 414
Target Start/End: Original strand, 24207989 - 24208167
Alignment:
| Q |
238 |
taatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactctt |
337 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || ||||||| |||| | |
|
|
| T |
24207989 |
taatggccttatttttcgcttctcttgccctcacacatcctcccaaaatgggaaagcggaacgaaaaataagaaccattaataatatgattcacactatg |
24208088 |
T |
|
| Q |
338 |
ctcgcccattcgtctg--ttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
414 |
Q |
| |
|
|| || || || |||| ||| || | ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
24208089 |
ctggctcactcttctgctctcccccataattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
24208167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 22208879 - 22208224
Alignment:
| Q |
8 |
tggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaat |
107 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
22208879 |
tggacatcaccgattttaagtacctctggtcatcagtattatattttatttttggatgattattctgatattttgtggatgttccctataagttacaaat |
22208780 |
T |
|
| Q |
108 |
ctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaatacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22208779 |
ctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggtgtgaatacaa |
22208680 |
T |
|
| Q |
208 |
caatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaata |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
22208679 |
caatacattgtttcataaatattgtactgataatggtcttattttctgtttctcttgtcctcacacttcatctcaacatggcaaagcggaatgtaaaata |
22208580 |
T |
|
| Q |
308 |
cgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaata |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22208579 |
cgcaccattaacaacatgattcacactcttctcgctcattcatccgttcctccctcattttggcatcatgctcttcaaatggctacttatcttcttaata |
22208480 |
T |
|
| Q |
408 |
tccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatattcgtgatccctcctacacacatcttcgtgtctttggttgtctttgtta |
507 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
22208479 |
tccttccccgaaagaatttttcaaatcattctcctactcaacttttatatcatcgtgatccctcctacattcatcttcgtgtctttggttgtctttgata |
22208380 |
T |
|
| Q |
508 |
tcctttgcatccttccactatcattaacaaactgcaaccacgctcaaccccgtgtgtcttcttagggtatcccactaatcacagaggttacagatgtttt |
607 |
Q |
| |
|
||| || ||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| || || | ||||||| |
|
|
| T |
22208379 |
tcccccgcttccatccactatcattaacaaactgcaaccacgctcgaccctctatgtcttcttagggtatcccactaatcacaaagtctaaaaatgtttt |
22208280 |
T |
|
| Q |
608 |
gatttgtcgcacagaaagatcatcgtttcccgacatgttatatttgatgagacaca |
663 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
22208279 |
gatttgttgcacagaaagatcatcgtttcccaacatgtcatatttaatgagacaca |
22208224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 225 - 414
Target Start/End: Original strand, 33163994 - 33164183
Alignment:
| Q |
225 |
aatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacat |
324 |
Q |
| |
|
|||||||| || |||||| |||||||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | |||||||| || || |
|
|
| T |
33163994 |
aatattgtactactaatggccttatttttcgcttctcttgccctcacacatcctcccaaaatgggaaagcggaacgaaaaataagaaccattaataatat |
33164093 |
T |
|
| Q |
325 |
gattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatcttcttaatatccttcc |
414 |
Q |
| |
|
|||||||||| | || || || || |||||||| || ||||||||||||||| ||||| ||||| |||||| | || ||||| ||||| |
|
|
| T |
33164094 |
gattcgcactatgctagctcactcttctgttcccccacaattttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc |
33164183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 218 - 397
Target Start/End: Original strand, 16592577 - 16592756
Alignment:
| Q |
218 |
tttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccatta |
317 |
Q |
| |
|
||||| |||||||| ||||| |||| ||| |||| |||||||||||||| |||| || || |||||||| ||||||||||| ||||| || |||| |
|
|
| T |
16592577 |
tttcacaaatattgcactgatcatggccttgtttttcgtttctcttgtccacacacatcctcacaaaatgggaaagcggaacgaaaaataaaaacaatta |
16592676 |
T |
|
| Q |
318 |
acaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttat |
397 |
Q |
| |
|
| || ||||| |||||| | || || ||||| | |||||| || ||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
16592677 |
ataatatgatacgcactatgctagctcattcttttgttcccccgtcattttggcatcatgctcttcacatggcaacttat |
16592756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 4703652 - 4703993
Alignment:
| Q |
7 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaa |
106 |
Q |
| |
|
||||| ||| ||| |||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| || ||| |||| | | |
|
|
| T |
4703652 |
atggatatcgccagttttaagctcctctggtcattggtattatattttattcttggatgattattctgattttttgtggacatttcctgtaagcaaggag |
4703751 |
T |
|
| Q |
107 |
tctcaagtttttgaaatgttcactacactttctaatcaaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaataca |
206 |
Q |
| |
|
||| |||||||||||||||| | | ||||||| |||||||||| ||||||||||| |||| ||| |||||||||| |||||||||||||| |||||| | |
|
|
| T |
4703752 |
tcttaagtttttgaaatgttaatttcactttccaatcaaattcatacacaattttctcaaattgttaaatgttttcgatgtgataatgggcatgaatata |
4703851 |
T |
|
| Q |
207 |
acaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaat |
306 |
Q |
| |
|
| ||| || | |||||||||||||||| ||||| | |||||||||| ||||||||||| ||| |||| |||||| |||||||| ||||||||||| | || |
|
|
| T |
4703852 |
ataattcactatttcataaatattgtgttgatacttgtcttatttttcgtttctcttgccctcacacatcatcttaaaatggcgaagcggaacgtaagat |
4703951 |
T |
|
| Q |
307 |
acgcaccattaacaacatgattcgcactcttctcgcccattc |
348 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4703952 |
acacactattaacaacatgatttgcactcttctcgctcattc |
4703993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 564 - 815
Target Start/End: Complemental strand, 9991655 - 9991407
Alignment:
| Q |
564 |
tcttcttagggtatcccactaatcacagaggttacagatgttttgatttgtcgcacagaaagatcatcgtttcccgacatgttatatttgatgagacaca |
663 |
Q |
| |
|
||||||||||||||| || |||||||| |||| ||| ||||||||||||||||||||||||||||||| |||| |||||||| | ||| |||||||||| |
|
|
| T |
9991655 |
tcttcttagggtatctcattaatcacataggtcacaaatgttttgatttgtcgcacagaaagatcatcatttcacgacatgtca-ctttcatgagacaca |
9991557 |
T |
|
| Q |
664 |
gtttccctttgcccacatgccttccctacctctcatctcctatgattgttttactgatgacctacaccca--tctattatccatcaatggaccaatccca |
761 |
Q |
| |
|
|||| |||||||| || | |||||||||| ||| | ||||||||| ||| ||| ||||| | |||||| |||||||||||||| ||| |||||| |
|
|
| T |
9991556 |
atttctctttgcccgcagacattccctacctttcaccgcctatgattatttcactcatgacttgcacccatctctattatccatca----acctatccca |
9991461 |
T |
|
| Q |
762 |
ccttaaaacctctttccaatgaccttcctagtccgccacctcctatacctgacc |
815 |
Q |
| |
|
| || |||||||| |||||||| ||||| |||| |||||| ||||| ||||| |
|
|
| T |
9991460 |
cattgcaacctcttcccaatgacattcctggtccatcacctcatatacttgacc |
9991407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 274 - 474
Target Start/End: Complemental strand, 9992169 - 9991970
Alignment:
| Q |
274 |
ttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttggcat |
373 |
Q |
| |
|
|||||||||||||| |||||| || || ||||||| || |||||| |||||||||||| ||||||||| ||||||| |||| ||||||||| ||||||| |
|
|
| T |
9992169 |
ttcatctcaaaatgataaagcgaaatgtaaaatacgtacgattaactacatgattcgcagtcttctcgctcattcgtatgtttctccctcatcttggcat |
9992070 |
T |
|
| Q |
374 |
catgcccttcaaatggctacttatcttcttaatatccttcctcgaaagaatttgtcaaatcattctcctactcaacttttgtatattcgtgatccctcct |
473 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||| || | | ||||||| || ||||||| |||| |||||| |||||||| ||||| ||||||| |
|
|
| T |
9992069 |
catgcacttcaaatggccacatatcttcttaatatcatttc-caaaagaatctgacaaatcactctcgaactcaaattttgtatcatcgtgtcccctcct |
9991971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 378
Target Start/End: Complemental strand, 29008643 - 29008309
Alignment:
| Q |
44 |
tattatgttttatttttggatgattattctgattttttgtggacgttccctataagtcacaaatctcaagtttttgaaatgttcactacactttctaatc |
143 |
Q |
| |
|
|||||||| ||||||| ||||||||| | |||| |||||||| || ||||| || ||||||||||| ||||| ||||||| ||||| | |||| |
|
|
| T |
29008643 |
tattatgtcctatttttagatgattatacaaatttcttgtggacttttcctattagcagaaaatctcaagtatttgacatgttcaagtcacttacaaatc |
29008544 |
T |
|
| Q |
144 |
aaattcgcacacaattttcccaaactgtcaaatgttttcaatgtgataatgggcgtgaatacaacaatacattgtttcataaatattgtgctgataatgg |
243 |
Q |
| |
|
|||| ||||| |||| |||| | | |||| |||||||||||||||||| ||||||| |||||| | ||||| ||||||| || || |||| |
|
|
| T |
29008543 |
ttattcaaacacagtttttacaaagtataaaatcttttcaatgtgataatggcggtgaatataacaatgagctatttcaacaatattgaactaatcatgg |
29008444 |
T |
|
| Q |
244 |
tcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttctcgcc |
343 |
Q |
| |
|
|||| |||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||| | || || |
|
|
| T |
29008443 |
tcttgtttttcgcttctcttgccctcacacatcgtcacaaaatgggaaagcggaacgaaaaataaaaaccattaacaatatgatacgcactatgctagct |
29008344 |
T |
|
| Q |
344 |
cattcgtctgttcctccctcattttggcatcatgc |
378 |
Q |
| |
|
||||| |||| || || || |||||||||||||| |
|
|
| T |
29008343 |
cattcttctgagccaccatcgttttggcatcatgc |
29008309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 9992282 - 9992211
Alignment:
| Q |
218 |
tttcataaatattgtgctgataatggtcttattttc--cgtttctcttgtccttacacttcatctcaaaatg |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | || || ||| ||| |||||||||||||||||| |
|
|
| T |
9992282 |
tttcattaatattgtgctgataatggtcttatttttttcattactgttgccctcacacttcatctcaaaatg |
9992211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 170 - 378
Target Start/End: Original strand, 29786 - 29993
Alignment:
| Q |
170 |
gtcaaatgttttcaatgtgataatgggcgtgaatacaacaatacattgtttcataaatattgtgctgataatggtcttattttccgtttctcttgtcctt |
269 |
Q |
| |
|
||||||| | |||||||||| ||||| ||||||| || ||| || ||||| ||||||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
29786 |
gtcaaatctgttcaatgtgacaatggtggtgaatataataatgagttatttcaacaatattgcactgatcatggtcttgttttc-gtttctcttgtcctc |
29884 |
T |
|
| Q |
270 |
acacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttctcgcccattcgtctgttcctccctcattttg |
369 |
Q |
| |
|
|||| || || |||||||| ||||||||||| ||||| | |||||||| || ||||| |||||| | || || ||||| | |||||| ||||| ||||| |
|
|
| T |
29885 |
acacatcctcacaaaatgggaaagcggaacgcaaaataagaaccattaataatatgatacgcactatgctagctcattcttttgttcccccctcgttttg |
29984 |
T |
|
| Q |
370 |
gcatcatgc |
378 |
Q |
| |
|
||||||||| |
|
|
| T |
29985 |
gcatcatgc |
29993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 624
Target Start/End: Original strand, 30157 - 30239
Alignment:
| Q |
542 |
caaccacgctcaaccccgtgtgtcttcttagggtatcccactaatcacagaggttacagatgttttgatttgtcgcacagaaa |
624 |
Q |
| |
|
||||| ||||| || |||||||||||||| || ||||| ||||||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
30157 |
caaccccgctctactccgtgtgtcttcttgggttatccgcctaatcatagaggttacaagtgttttgatttgtctaacagaaa |
30239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 240 - 400
Target Start/End: Original strand, 36578 - 36738
Alignment:
| Q |
240 |
atggtcttattttccgtttctcttgtccttacacttcatctcaaaatggcaaagcggaacgtcaaatacgcaccattaacaacatgattcgcactcttct |
339 |
Q |
| |
|
|||||||| |||| || |||||||| ||| |||| || || |||||||| ||||||||||| ||||| | ||||||||||| ||||| |||||| | || |
|
|
| T |
36578 |
atggtcttgtttttcgcttctcttgccctcacacatcgtcacaaaatgggaaagcggaacgaaaaataagaaccattaacaatatgatacgcactatgct |
36677 |
T |
|
| Q |
340 |
cgcccattcgtctgttcctccctcattttggcatcatgcccttcaaatggctacttatctt |
400 |
Q |
| |
|
|| ||||| |||||||| || || |||||||||||||| || || ||| | ||||||||| |
|
|
| T |
36678 |
agctcattcttctgttccaccatcgttttggcatcatgctctccatatgacaacttatctt |
36738 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 16659269 - 16659183
Alignment:
| Q |
7 |
atggacatcaccaattttaagcacctctggtcatcggtattatgttttatttttggatgattattctgattttttgtggacgttccc |
93 |
Q |
| |
|
||||||||| |||||||||||| | | ||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||| |
|
|
| T |
16659269 |
atggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccc |
16659183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 33458 - 33409
Alignment:
| Q |
44 |
tattatgttttatttttggatgattattctgattttttgtggacgttccc |
93 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||||||||||| ||||| |
|
|
| T |
33458 |
tattatgttttatttttggataactgttctaattttttgtggacattccc |
33409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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