View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7245_low_10 (Length: 242)
Name: NF7245_low_10
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7245_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 2432836 - 2433047
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2432836 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2432935 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2432936 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttg |
2433035 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2433036 |
ccacaaggatat |
2433047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 2620111 - 2620322
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620111 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2620210 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
2620211 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2620310 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2620311 |
ccacaaggatat |
2620322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 2572637 - 2572426
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2572637 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2572538 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2572537 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2572438 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2572437 |
ccacaaggatat |
2572426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 2448703 - 2448914
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448703 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2448802 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2448803 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttg |
2448902 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2448903 |
ccacaaggatat |
2448914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 2677473 - 2677262
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677473 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2677374 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2677373 |
cattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2677274 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2677273 |
ccacaaggatat |
2677262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 2586421 - 2586632
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2586421 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaag |
2586520 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2586521 |
catcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttg |
2586620 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2586621 |
ccacaaggatat |
2586632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 2600215 - 2600004
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600215 |
agattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2600116 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||| ||||||||||||||||| ||| ||||| |
|
|
| T |
2600115 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttg |
2600016 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
||||||| |||| |
|
|
| T |
2600015 |
ccacaagtatat |
2600004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 2645035 - 2644824
Alignment:
| Q |
13 |
agattattcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
112 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2645035 |
agattcttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaag |
2644936 |
T |
|
| Q |
113 |
tattaaggagaatatactttttggaagagaggatgctacatttgaagaaattatggatgctgctaaagcttccaatgctcataatttcatatcaatgttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
2644935 |
cattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttg |
2644836 |
T |
|
| Q |
213 |
ccacaaggatat |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2644835 |
ccacaaggatat |
2644824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 17872804 - 17872673
Alignment:
| Q |
20 |
tcttgatggagttgctattcataagttgcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaag |
119 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| |||| ||||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17872804 |
tcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaa |
17872705 |
T |
|
| Q |
120 |
gagaatatactttttggaagagaggatgctac |
151 |
Q |
| |
|
||||||||| ||||||| | ||| |||||||| |
|
|
| T |
17872704 |
gagaatataatttttggtaaagaagatgctac |
17872673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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