View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7245_low_2 (Length: 432)

Name: NF7245_low_2
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7245_low_2
NF7245_low_2
[»] chr5 (2 HSPs)
chr5 (18-420)||(23040391-23040793)
chr5 (57-118)||(42313912-42313973)
[»] chr4 (12 HSPs)
chr4 (18-402)||(42743681-42744065)
chr4 (18-402)||(42753040-42753424)
chr4 (18-391)||(42734459-42734829)
chr4 (26-286)||(42717064-42717321)
chr4 (45-265)||(42762692-42762909)
chr4 (141-300)||(42769674-42769833)
chr4 (322-402)||(42762960-42763039)
chr4 (323-368)||(42769850-42769895)
chr4 (333-368)||(42717371-42717406)
chr4 (389-420)||(42744078-42744109)
chr4 (389-420)||(42753437-42753468)
chr4 (47-115)||(42769565-42769633)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 23040793 - 23040391
Alignment:
Q  18 ctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23040793 ctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagtacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 23040694  T
Q  118 cacgacatttatccccccagcaaaccttataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcatt 217  Q
    || |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23040693 catgacataaatccccccagcaaaccttataggctgcaactcgagcttttggtgatccaccacttgctgttcctcggccattgccaaatacactcgcatt 23040594  T
Q  218 agcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgtatgtttcatttgggtctctaataggaatt 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23040593 agcaacgaaatttcctccaacagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgaatgtttcatttgggtctctaataggaatt 23040494  T
Q  318 ggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaagattcaaagtatgagcatagaaaattatgaatga 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23040493 ggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagcatagaaaattatgaatga 23040394  T
Q  418 tgt 420  Q
    |||    
T  23040393 tgt 23040391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 42313973 - 42313912
Alignment:
Q  57 actgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatc 118  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||| || | |||||||||    
T  42313973 actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc 42313912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 42743681 - 42744065
Alignment:
Q  18 ctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  42743681 ctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 42743780  T
Q  118 cacgacatttatccccccagcaaaccttataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcatt 217  Q
    |  |||||  |||  |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  42743781 cttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcatt 42743880  T
Q  218 agcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgtatgtttcatttgggtctctaataggaatt 317  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  42743881 ggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttgggtttctaataggaatt 42743980  T
Q  318 ggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaagattcaaagtatgagcata 402  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42743981 ggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagcata 42744065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 42753040 - 42753424
Alignment:
Q  18 ctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  42753040 ctattgtgaaattcaacaggaatatttctacccaaagacactgaaagcacgtcgacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 42753139  T
Q  118 cacgacatttatccccccagcaaaccttataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcatt 217  Q
    |  |||||  |||  |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  42753140 cttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcatt 42753239  T
Q  218 agcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgtatgtttcatttgggtctctaataggaatt 317  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  42753240 ggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgcactattgaatgtttcatttgggtttctaataggaatt 42753339  T
Q  318 ggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaagattcaaagtatgagcata 402  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42753340 ggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaaaattcaaagtatgagcata 42753424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 42734829 - 42734459
Alignment:
Q  18 ctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcat 117  Q
    |||| ||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42734829 ctatcgtgaaattcaacaggaaaatcaccactcaaagacactgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcat 42734730  T
Q  118 cacgacatttatccccccagcaaaccttataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcatt 217  Q
    ||  |||   |   ||||| |||||||||||||| |  ||||| |||||||| |||||||||||||||||||| |  |||| |||||||||||| |||||    
T  42734729 cataacacgaa---ccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcatt 42734633  T
Q  218 agcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgtatgtttcatttgggtctctaataggaatt 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  ||  |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  42734632 agcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttgggtttctaataggaatt 42734533  T
Q  318 ggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaagattcaaa 391  Q
    |||| ||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||| || |||||||    
T  42734532 ggcactgccatatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgtaattaaaattcaaa 42734459  T

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Target: chr4; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 42717064 - 42717321
Alignment:
Q  26 aaattcaacaggaaaatttctacccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcacgacat 125  Q
    |||||||||||||||||  | ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  42717064 aaattcaacaggaaaatcaccacccaaagacactgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatcataacat 42717163  T
Q  126 ttatccccccagcaaaccttataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcattagcaacga 225  Q
      |||||   | ||||||||||||||| | ||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||| ||||||||||| |    
T  42717164 gaatccc---aacaaaccttataggctacaactcgtgcttttggcgatccaccacttgctgttccattgccatagccaaatacacttgcattagcaacaa 42717260  T
Q  226 aatttcctccagcagttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactatt 286  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  42717261 aatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcactatt 42717321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 42762692 - 42762909
Alignment:
Q  45 ctacccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcacgacatttatccccccagcaaacct 144  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||||  |||||   | |||||||    
T  42762692 ctacccaaagacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtctgcatcataacatccatccc---aacaaacct 42762788  T
Q  145 tataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcattagcaacgaaatttcctccagcagttga 244  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42762789 tataggctgcaactcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacacttgcattagcaacgaaatttcctccagcagttga 42762888  T
Q  245 taaagtatgtgaaccatgacc 265  Q
    |||||| ||||||||||||||    
T  42762889 taaagtgtgtgaaccatgacc 42762909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 141 - 300
Target Start/End: Original strand, 42769674 - 42769833
Alignment:
Q  141 accttataggctgcgactcgagcttttggtgatccaccacttgctgttccttggccattgccaaatacactcgcattagcaacgaaatttcctccagcag 240  Q
    ||||||||||| || ||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||| || |    
T  42769674 accttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcctcccgcgg 42769773  T
Q  241 ttgataaagtatgtgaaccatgaccatcaaagtcacgtgcactattgtatgtttcatttg 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||    
T  42769774 ttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttg 42769833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 42762960 - 42763039
Alignment:
Q  322 ttgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgtaataaagattcaaagtatgagcata 402  Q
    |||||||| |||||||   |||||||||||||||||||||||| |||||||  ||||||||| ||||||| || |||||||    
T  42762960 ttgccagaaagcctttaaaaaaatatcttgctccaataagctttctacaaaattgtaataaa-attcaaaataggagcata 42763039  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 42769850 - 42769895
Alignment:
Q  323 tgccagatagcctttgttaaaatatcttgctccaataagcttccta 368  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||||    
T  42769850 tgccaaatagcctttgtaaaaatatcttgctccaattagcttccta 42769895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 368
Target Start/End: Original strand, 42717371 - 42717406
Alignment:
Q  333 cctttgttaaaatatcttgctccaataagcttccta 368  Q
    ||||||| ||||||||||||||||||||||||||||    
T  42717371 cctttgtaaaaatatcttgctccaataagcttccta 42717406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 420
Target Start/End: Original strand, 42744078 - 42744109
Alignment:
Q  389 aaagtatgagcatagaaaattatgaatgatgt 420  Q
    ||||||||||||||||||||||||||||||||    
T  42744078 aaagtatgagcatagaaaattatgaatgatgt 42744109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 420
Target Start/End: Original strand, 42753437 - 42753468
Alignment:
Q  389 aaagtatgagcatagaaaattatgaatgatgt 420  Q
    ||||||||||||||||||||||||||||||||    
T  42753437 aaagtatgagcatagaaaattatgaatgatgt 42753468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 42769565 - 42769633
Alignment:
Q  47 acccaaagacactgaaagcacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgc 115  Q
    ||||| |||| | |||| |||||||||||| |||  ||| |||||||| |||||||||||||| |||||    
T  42769565 acccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgc 42769633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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