View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7245_low_5 (Length: 397)
Name: NF7245_low_5
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7245_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 53677601 - 53677235
Alignment:
| Q |
19 |
gagaagtggttatgagaaggtggattctctcccttcgttataagattaaactgttttatactattttttgcactataaattagataatagttaataattt |
118 |
Q |
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| T |
53677601 |
gagaagcggttatgagaaggtggattctctcccttcgttataagattaaactgttttatactattttttgcactataaattagataatagttaataattt |
53677502 |
T |
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| Q |
119 |
tcaaatttcaggttgttgcagagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaaca |
218 |
Q |
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| T |
53677501 |
tcaaatttcaggttgttgcagagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaaca |
53677402 |
T |
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| Q |
219 |
ctatttgaatcttctttatcattacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactattttta |
318 |
Q |
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| T |
53677401 |
ctatttgaatcttctttatcattacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactattttta |
53677302 |
T |
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| Q |
319 |
tttcatttacagataattttaaatgaaattcatgtgtgaaatattaaaactcaactctgtttgatgt |
385 |
Q |
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| T |
53677301 |
tttcatttacagataattttaaatgaaattcatgtgtgaaatattaaaactcaactctgtttgatgt |
53677235 |
T |
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