View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7245_low_8 (Length: 342)

Name: NF7245_low_8
Description: NF7245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7245_low_8
NF7245_low_8
[»] chr2 (2 HSPs)
chr2 (2-342)||(44741948-44742288)
chr2 (240-328)||(17303530-17303618)
[»] chr3 (7 HSPs)
chr3 (40-303)||(26373410-26373673)
chr3 (240-314)||(557578-557652)
chr3 (236-314)||(30499021-30499099)
chr3 (236-312)||(9192336-9192412)
chr3 (236-300)||(8819397-8819461)
chr3 (242-314)||(42433433-42433504)
chr3 (231-325)||(43335267-43335361)
[»] scaffold0042 (1 HSPs)
scaffold0042 (40-303)||(30934-31197)
[»] chr5 (4 HSPs)
chr5 (137-303)||(4157476-4157642)
chr5 (236-307)||(5215101-5215172)
chr5 (236-298)||(35193240-35193302)
chr5 (156-205)||(17589795-17589844)
[»] chr4 (3 HSPs)
chr4 (236-314)||(23096519-23096597)
chr4 (155-206)||(12328295-12328346)
chr4 (236-303)||(12328412-12328479)
[»] chr1 (2 HSPs)
chr1 (236-300)||(8881458-8881522)
chr1 (238-276)||(48563419-48563457)
[»] scaffold0445 (1 HSPs)
scaffold0445 (236-314)||(10391-10469)
[»] scaffold0031 (1 HSPs)
scaffold0031 (161-206)||(96085-96130)
[»] chr7 (1 HSPs)
chr7 (266-314)||(43574030-43574078)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 342
Target Start/End: Original strand, 44741948 - 44742288
Alignment:
Q  2 ggatgtcgaagaatatgtaatgttggaagtaaatttaaaaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttg 101  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44741948 ggatgtcaatgaaaatgtaatgttggaagtaaatttaaaaaccccaaagggtatggttctttt-aacccgtaagggctgtttggttactaacgtgtgttg 44742046  T
Q  102 ga-tcatcccttgatcagaattcaagcgcgtttggaaccgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgt 200  Q
    || ||||||||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44742047 gactcatcccttgatctgggttcaagcgcgtctggaaccgtttgtgttggtggtccgtgcttgattctcttatattctaggtctgttgagatctgcatgt 44742146  T
Q  201 ctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44742147 ctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctattatgcatgttgttttgttcaggaggttgctggtacgtggatcttga 44742246  T
Q  301 tactgtgctggcgggtggtctattcgcccactttaacccttt 342  Q
    ||||||| |||||  || |||||| ||| |||||||||||||    
T  44742247 tactgtgttggcgattgatctatttgccaactttaacccttt 44742288  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 17303530 - 17303618
Alignment:
Q  240 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgggtggtctattcgcc 328  Q
    |||||||||||||||||| | || || |||||||||| | ||| |||||||||||||| ||||  ||| ||||||  | ||||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgcc 17303618  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 26373673 - 26373410
Alignment:
Q  40 aaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaattcaagcgcgtttggaac 138  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| | ||| |  ||||  | ||| || |||    
T  26373673 aaacccgaaagggtatggttcttta-aacccgtaagggctgtttggttactaacgtgtgttggactcatcccataatctgggttcagacacgtctgaaac 26373575  T
Q  139 cgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattctta 238  Q
     | ||||||||||||||||||||||||||| | |||||  || |||||||||||||||| |||||||||||| |||| ||||| |||| |||||   |||    
T  26373574 tggttgtgttggtggtctgtgcttgattctatgatatttcagttctgttgagatctgcaggtctcaaggcgtcaagactgcttcctctccggtaccgtta 26373475  T
Q  239 tgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 303  Q
    ||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  26373474 tgctcgaaagagctattttgcttgttgttttgttcaagaggttgctggtacgtggatcttgatac 26373410  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 557578 - 557652
Alignment:
Q  240 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgg 314  Q
    |||||||||||||||||| | || ||||||||||||| | ||| |||||||||||||||||||| ||| ||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcgg 557652  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 30499099 - 30499021
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgg 314  Q
    |||||||||||||||||| ||||||||||| |||||| ||| | |||||||||| |||||||||| || ||| ||||||    
T  30499099 ttatgctcgaaagagctactatgcatgttgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcgg 30499021  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 9192412 - 9192336
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggc 312  Q
    |||||||||||||||||||||| | |||||||||||||| | |  ||||||||||||||| ||||||| ||| ||||    
T  9192412 ttatgctcgaaagagctattattcttgttgttttgttcatggggctgctggtacgtggattttgataccgtgttggc 9192336  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 8819461 - 8819397
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 300  Q
    |||||||| ||||||||| ||||| || || |||||||||  | |||||||||||||||||||||    
T  8819461 ttatgctcaaaagagctactatgcctgctgatttgttcagtgggttgctggtacgtggatcttga 8819397  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 42433504 - 42433433
Alignment:
Q  242 tcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgg 314  Q
    |||||||||||||||| | || || |||||||||| ||| |||||||||||||||| ||||| ||| ||||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcaggggtt-gctggtacgtggatctcgataccgtgttggcgg 42433433  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 43335361 - 43335267
Alignment:
Q  231 tattcttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgggtggtctattc 325  Q
    |||| ||||||||||||||||| |||| | ||||| |||| |||||   ||| |||||||||||| ||||| ||| | |||||| ||||| ||||    
T  43335361 tattgttatgctcgaaagagcttttatacttgttgctttggtcagggagttgttggtacgtggattttgattctgagttggcggttggtccattc 43335267  T

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Target: scaffold0042 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 30934 - 31197
Alignment:
Q  40 aaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaattcaagcgcgtttggaac 138  Q
    |||||| |||||||||||||||||  ||||  |||||| |||||||||||||||||||||| || ||||||| ||||| || ||||  | ||| || |||    
T  30934 aaacccgaaagggtatggttcttta-aacctataagggttgtttggttactaacgtgtgttagactcatcccatgatctgagttcagacacgtctgaaac 31032  T
Q  139 cgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattctta 238  Q
     | ||||||||||||| ||||||||||||| | |||||  |||||||||||||| |||| |||||||||||| |||| ||||| ||||  ||||   |||    
T  31033 tggttgtgttggtggtttgtgcttgattctatgatatttcaggtctgttgagatatgcaggtctcaaggcgtcaagactgcttcctctctggtaccgtta 31132  T
Q  239 tgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 303  Q
    ||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||    
T  31133 tgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgatac 31197  T

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Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 4157476 - 4157642
Alignment:
Q  137 accgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattct 236  Q
    |||| ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| |||||||||||| |||| | ||| |||| ||||||  |    
T  4157476 accggttgtgttggtggtctgtgcttgattctttgatattccaggtctgttgtgatctgcaggtctcaaggcgtcaagactacttcctctccggtatcgt 4157575  T
Q  237 tatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 303  Q
    |||||| |||||||||||| ||| |  | |||||||||||||  ||||||| |||||||||||||||    
T  4157576 tatgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgatac 4157642  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 5215101 - 5215172
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtg 307  Q
    |||||||||||||||||| ||||||||||| |||||||| | | ||| ||||||||||||||||| ||||||    
T  5215101 ttatgctcgaaagagctactatgcatgttgctttgttcaaggggttgttggtacgtggatcttgaaactgtg 5215172  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 35193240 - 35193302
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatctt 298  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||| ||||||| |||||||    
T  35193240 ttatgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctt 35193302  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 17589844 - 17589795
Alignment:
Q  156 tgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaa 205  Q
    |||| |||||||||| || ||| ||||||||||||||||||| |||||||    
T  17589844 tgtggttgattctctgatgttccaggtctgttgagatctgcaggtctcaa 17589795  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 23096597 - 23096519
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgg 314  Q
    |||||||||||||||||||||||||||||||||| |||||  |  ||||||||||||||| ||||||| ||| ||||||    
T  23096597 ttatgctcgaaagagctattatgcatgttgttttattcagcgggatgctggtacgtggattttgataccgtgttggcgg 23096519  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 12328295 - 12328346
Alignment:
Q  155 ctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaag 206  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  12328295 ctgtgcttgattctctaatattctaggtctgttgagatctacaagtctcaag 12328346  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 12328412 - 12328479
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatac 303  Q
    ||||||||||||||||||||||||  | ||| ||||||||| | ||||||||| ||||||| ||||||    
T  12328412 ttatgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgatac 12328479  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 8881522 - 8881458
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 300  Q
    |||||||||||| ||||||||||| ||||||||| || ||||| |||||||||||||||||||||    
T  8881522 ttatgctcgaaatagctattatgcctgttgtttttttaaggaggttgctggtacgtggatcttga 8881458  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 48563419 - 48563457
Alignment:
Q  238 atgctcgaaagagctattatgcatgttgttttgttcagg 276  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  48563419 atgctcgaaagagctattatgcttgttgttttgttcagg 48563457  T

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Target: scaffold0445 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 10391 - 10469
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgg 314  Q
    |||||||| ||||||||  ||||| || || |||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  10391 ttatgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcgg 10469  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 96130 - 96085
Alignment:
Q  161 ttgattctcttatattctaggtctgttgagatctgcatgtctcaag 206  Q
    |||||||||| || ||| || |||||||||||||||||||||||||    
T  96130 ttgattctctgatgttccagatctgttgagatctgcatgtctcaag 96085  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 43574078 - 43574030
Alignment:
Q  266 ttttgttcaggagtttgctggtacgtggatcttgatactgtgctggcgg 314  Q
    |||| |||||| | |||||||||||||||||||||||| ||| ||||||    
T  43574078 ttttattcagggggttgctggtacgtggatcttgataccgtgttggcgg 43574030  T

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