View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_high_10 (Length: 504)
Name: NF7246_high_10
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 6 - 489
Target Start/End: Complemental strand, 42929661 - 42929178
Alignment:
| Q |
6 |
gtcgaagaatatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
105 |
Q |
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| T |
42929661 |
gtcgaagcaaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
42929562 |
T |
|
| Q |
106 |
cttgaagaccttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929561 |
cttgaagaccttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaac |
42929462 |
T |
|
| Q |
206 |
tacactatctttgaatggcaagctttgagtttcaccacctccaattgcagcagctttattattaacctctaaaatggagttggtctcatctggctcaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42929461 |
tacactatctttgaatggcaagctttgagtttcaccacctccaattgcagcagctttattattaacctctaagatggagttggtctcatctggctcaaag |
42929362 |
T |
|
| Q |
306 |
aaaaaccgatcagaagataatccacgaatcacagtttcgatcgaatcaacttgtttggattcttgatcattagaagcttttgaaaagctagaatcacagt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929361 |
aaaaaccgatcagaagataatccacgaatcacagtttcgatcgaatcaacttgtttggattcttgatcattagaagcttttgaaaagctagaatcacagt |
42929262 |
T |
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| Q |
406 |
ttggagaaacagtggagaaggattcagaagcgtccaagtaaactgagttaatggttttgaaagtgtcatctttgttgatgttat |
489 |
Q |
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| T |
42929261 |
ttggagaaacagtggagaaggattcagaagcatccaagtaaactgagttaatggttttgaaagtgtcatctttgttgatgttat |
42929178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 50463289 - 50463383
Alignment:
| Q |
33 |
aaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
127 |
Q |
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|||||||||||||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
50463289 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
50463383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 25531024 - 25531099
Alignment:
| Q |
30 |
aataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
105 |
Q |
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|||||||||| ||||||| ||| |||| | |||||||| |||||||||| || | ||||||||||||||||||| |
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| T |
25531024 |
aataaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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