View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_high_11 (Length: 480)
Name: NF7246_high_11
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38555854 - 38555567
Alignment:
| Q |
1 |
acagacaataaacatgacgatttcgtcctttaaacaaatgacgatgatacatggccgtccaaaagaccaacatacctttacaccgtagaagagataaaat |
100 |
Q |
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| T |
38555854 |
acagacaataaacatgacgatttcgtcctttaaacaaatgacgatgatacatggccgtccaaaagaccaacatacctttacaccgtagaagagataaaat |
38555755 |
T |
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| Q |
101 |
tagatgggaggattacgttttctttgtaaacaatagttgcatctttagcttcatatagacaatcaaaattatgatgtttggtcggtatcttatcctaatt |
200 |
Q |
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| T |
38555754 |
tagatgggaggattacgttttctttgtaaacaatagttgcatctttagcttcatatagacaatcaaaattatgatgtttggtcggtatcttatcctaatt |
38555655 |
T |
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| Q |
201 |
atatatacatcagtcactagcaatcaaagacaatttcaaatttcggttcctaaagccatatttatttataatttgttaatggcttgtg |
288 |
Q |
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| T |
38555654 |
atatatacatcagtcactagcaatcaaagacaatttcaaatttcggttcctaaagccatatttatttataatttgttaatggcttgtg |
38555567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 349 - 465
Target Start/End: Complemental strand, 38555506 - 38555390
Alignment:
| Q |
349 |
gattttgtcctttaaaacataacaacatannnnnnnaagggaatataaattcatttttgctctctacaaaaatttccttcaaattaatttggtcttccac |
448 |
Q |
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| T |
38555506 |
gattttgtcctttaaaacataacaacatatttttttaagggaatataaattcatttttgctctctacaaaaatttccttcaaattaatttggtcttccac |
38555407 |
T |
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| Q |
449 |
agtttccttcaacattg |
465 |
Q |
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| T |
38555406 |
agtttccttcaacattg |
38555390 |
T |
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