View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_high_12 (Length: 453)
Name: NF7246_high_12
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 32911590 - 32912017
Alignment:
| Q |
16 |
cagtttctattattgatggaacccaagaaggttcttatctctgggtatgacaaatatagaactaaagaatttcatttttattgtttatattcatatctct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32911590 |
cagtttctattattgatggaacccaagaaggttcttatctctgggtatgacaaatatagaactaaagaatttaatttttattgtttatattcatatctct |
32911689 |
T |
|
| Q |
116 |
ttgagaaataatatgaatttagaaataatgatcattgtcaaagtcaaacgatttcaatgatctactacgtaaaaaatcctatgcattggtattaattatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32911690 |
ttgagaaataatatgaatttagaaataatgatcattgtcaaagtcaaacgatttcaatgatctactacgtaaaaaatcctatgcattggtattaattatt |
32911789 |
T |
|
| Q |
216 |
ttcattattttcttaataggtgacagttaactatgcattggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32911790 |
ttcattattttcttaataggtgacagttaactatgcattggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatca |
32911889 |
T |
|
| Q |
316 |
gttcaaatggcatatgcagtgtcaaagaaaacagctaaaaatgctccaaaagctgctgatggagttgatccatacattaagaagcttgtactcaagggaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32911890 |
gttcaaatggcatatgcagtgtcaaagaaaacagctaaaaatgctccaaaagttgctgatggagttgatccatacattaagaagcttgtactcaagggaa |
32911989 |
T |
|
| Q |
416 |
aaccatatgatctctatgttcacaggtt |
443 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
32911990 |
aaccatatgatctctatgttcacaggtt |
32912017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 32923800 - 32924017
Alignment:
| Q |
226 |
tcttaataggtgacagttaactatgcattggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatgg |
325 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| || || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32923800 |
tctttataggtgacagttaactatgcattggggaaattgggaaaaaaattcacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatgg |
32923899 |
T |
|
| Q |
326 |
catatgcagtgtcaaagaaaacagctaaaaatgctccaaaagctgctgatggagttgatccatacattaagaagcttgtactcaagggaaaaccatatga |
425 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32923900 |
catatgcagtgtcaaagtatacagctaaaaatgctccaaaagttgctgatggagaagatccatacattaagaagcttgtactcaagggaaaaaaatatga |
32923999 |
T |
|
| Q |
426 |
tctctatgttcacaggtt |
443 |
Q |
| |
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|||||||||||| ||||| |
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| T |
32924000 |
tctctatgttcataggtt |
32924017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 32934907 - 32935124
Alignment:
| Q |
226 |
tcttaataggtgacagttaactatgcattggggaatttagggaaaaag-tacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatg |
324 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
32934907 |
tctttataggtgacagttaactacatattggggaattt-gggaaaaagcttcacaaaaacagtgggagtaattgaccttggaggtggttcagttcaaatg |
32935005 |
T |
|
| Q |
325 |
gcatatgcagtgtcaaagaaaacagctaaaaatgctccaaaagctgctgatggagttgatccatacattaagaagcttgtactcaagggaaaaccatatg |
424 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| || ||||||||||||||||||||||| | ||||| |
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| T |
32935006 |
acatatgctgtgtcaaagaaaacagctaaaaatgctccaaaagttgcagatggagaggatccatatataaagaagcttgtactcaagggaaagcaatatg |
32935105 |
T |
|
| Q |
425 |
atctctatgttcacaggtt |
443 |
Q |
| |
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| ||||||||||| ||||| |
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| T |
32935106 |
acctctatgttcataggtt |
32935124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 32923443 - 32923493
Alignment:
| Q |
16 |
cagtttctattattgatggaacccaagaaggttcttatctctgggtatgac |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32923443 |
cagtttctattattgatggaacccaagaaggttcttatctctgggtatgac |
32923493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 32934285 - 32934331
Alignment:
| Q |
16 |
cagtttctattattgatggaacccaagaaggttcttatctctgggta |
62 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
32934285 |
cagtttctattatagatggaacccaagaaggttcttatatgtgggta |
32934331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 443
Target Start/End: Original strand, 32942537 - 32942682
Alignment:
| Q |
298 |
gatcttggaggtggatcagttcaaatggcatatgcagtgtcaa-agaaaacagctaaaaatgctccaaaagctgctgatggagttgatccatacattaag |
396 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||| |||| | ||| ||||| |||||| ||| || | |||| ||||||||||| || |
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| T |
32942537 |
gatcttggagggggatcagttcaaatggtatatgcagtctcaagagaaca-agcaaaaaaagctccacaagtacctcagggagaggatccatacataaaa |
32942635 |
T |
|
| Q |
397 |
aagcttgtactcaagggaaaaccatatgatctctatgttcacaggtt |
443 |
Q |
| |
|
||| ||||||| || ||||| |||| | ||||||||||||||||| |
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| T |
32942636 |
aagattgtacttaaaggaaagaaatattacctctatgttcacaggtt |
32942682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 32900892 - 32900926
Alignment:
| Q |
298 |
gatcttggaggtggatcagttcaaatggcatatgc |
332 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |
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| T |
32900892 |
gatcttggaggtggatctgttcaaatggcatatgc |
32900926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 11823939 - 11824157
Alignment:
| Q |
226 |
tcttaataggtgacagttaactatgcattggggaatttagggaaaaagtacacaaaaacagtgggagtaatggatcttggaggtggatcagttcaaatgg |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11823939 |
tctttataggtgacagttaactatgcattggggactttggggaaaaaattcacaaaaacagtgggagtaatggatcttggaggtggatcggttcaaatgg |
11824038 |
T |
|
| Q |
326 |
catatgcagtgtcaaagaaaacagctaaaaatgctccaaaagctgctgatggagttgatccatacattaagaagcttgtactcaaggg-aaaaccatatg |
424 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||| |
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|
| T |
11824039 |
catatgcagtgtcaaggaatacagctaaaaatgctccaaaagttgctgatggagatgatccatatattaagaagcttgtactcaagggaaaaaaaatatg |
11824138 |
T |
|
| Q |
425 |
atctctatgttcacaggtt |
443 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
11824139 |
atctctatgttcataggtt |
11824157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 11823657 - 11823707
Alignment:
| Q |
16 |
cagtttctattattgatggaacccaagaaggttcttatctctgggtatgac |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11823657 |
cagtttctattattgatggaacccaagaaggttcttatctatgggtatgac |
11823707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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