View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_high_13 (Length: 434)
Name: NF7246_high_13
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 45 - 418
Target Start/End: Complemental strand, 15277886 - 15277512
Alignment:
| Q |
45 |
attcatttcttaaattaatatatggtttacactttgaatgaataacaat-catcttaaaacacccaacatgcgtctttgtcatcctaaaaggatcacacc |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15277886 |
attcatttcttaaattaatatatggtttacactttgaatgaataacaattcatcttaaaacacccaacatgcgtctttgtcatcctaaaaggatcacacc |
15277787 |
T |
|
| Q |
144 |
ctgaaagaaacaaactgcaaatcagaaacaagttcaatatgctatgttgttttgtagctcatctatccgtcnnnnnnntgttgtagctcatctaaaacat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15277786 |
ctgaaagaaacaaactgcaaatcagaaacaagttcaatatgctatgttgttttgtagctcatctatccgtcaaaaaaatgttgtagctcatctaaaacat |
15277687 |
T |
|
| Q |
244 |
aacttagagcaaaagctccaccagcttaagaaaaaagatggtcaaatgtaaaacataacttgcagctcatctttgatataggaatactccgtcgtccacc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15277686 |
aacttagagcaaaagctccaccagcttaagaaaaaagatggtcaaatttaaaacataacttgcagctcatctttgatataggaatactccgtcgtccacc |
15277587 |
T |
|
| Q |
344 |
gttcgcgtagtaactccctttaccggaaaccaaactttcttcatcttctcttgtaccatgtgtgatcttattgtt |
418 |
Q |
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| T |
15277586 |
gttcgcgtagtaactccctttaccggaaaccaaactttcttcatcttctcttgtaccatgtgtgatcttattgtt |
15277512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 14720320 - 14720205
Alignment:
| Q |
77 |
tttgaatgaataacaatcat-cttaaaacacccaacatgcgtctttgtcatcctaaaaggatcacaccctgaaagaaacaaactgcaaatcagaaacaag |
175 |
Q |
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| T |
14720320 |
tttgaatgaataacaatttttctgacaacaccctatctgcatctttgtcatcctaaaagtatcacatcctgaaagaaataaactgaaaatcaaaaacaag |
14720221 |
T |
|
| Q |
176 |
ttcaatatgctatgtt |
191 |
Q |
| |
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|||| |||||||||| |
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| T |
14720220 |
ttcataatgctatgtt |
14720205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 15278040 - 15278003
Alignment:
| Q |
13 |
aatatgtataaatacctatagggtctcatttaattcat |
50 |
Q |
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| T |
15278040 |
aatatgtataaatacctatagggtctcatttaattcat |
15278003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 14720205 - 14720163
Alignment:
| Q |
224 |
ttgtagctcatctaaaacataacttagagcaaaagctccacca |
266 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
14720205 |
ttgtagctcatctaaaacataaattatagcaaaagctccacca |
14720163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 5614592 - 5614686
Alignment:
| Q |
44 |
aattcatttcttaaattaatatatggtttacactttgaatgaataacaat-catcttaaaacacccaacatgcgtctttgtcatcctaaaaggatcaca |
141 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||| || |||| |||||| |||||||||||||||||| |||||| |
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| T |
5614592 |
aattcatttcttaaattcata----gtttaccatttgaatgaataacaattcatcttacaataccctacatgcatctttgtcatcctaaaagtatcaca |
5614686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 21159879 - 21159973
Alignment:
| Q |
44 |
aattcatttcttaaattaatatatggtttacactttgaatgaataacaat-catcttaaaacacccaacatgcgtctttgtcatcctaaaaggatcaca |
141 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||| || |||| |||||| |||||||||||||||||| |||||| |
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|
| T |
21159879 |
aattcatttcttaaattcata----gtttaccatttgaatgaataacaattcatcttacaataccctacatgcatctttgtcatcctaaaagtatcaca |
21159973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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