View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_high_36 (Length: 219)
Name: NF7246_high_36
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 22000497 - 22000689
Alignment:
| Q |
10 |
gtgagaagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22000497 |
gtgaaaagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact |
22000596 |
T |
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| Q |
110 |
tgtggtagctaatgcatagaagccaatccattcatctctatcatattgctttaatcccaaggcagagattctagtctagtatatcaattatgt |
202 |
Q |
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| T |
22000597 |
tgtggtagctaatgcatagaagccaatccattcatctctgtcatattgctttaatcccaaggcagagattctagtctagtatatcaattatgt |
22000689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 6724025 - 6723902
Alignment:
| Q |
25 |
aagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtggtagctaatgc |
124 |
Q |
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| T |
6724025 |
aagttgcacatgaggaaccaatccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaatttgtggtaacaaattc |
6723926 |
T |
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| Q |
125 |
atagaagccaatccattcatctct |
148 |
Q |
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| T |
6723925 |
atagaagccaacccattcatctct |
6723902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 17688352 - 17688165
Alignment:
| Q |
15 |
aagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtgg |
114 |
Q |
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| T |
17688352 |
aagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtgg |
17688253 |
T |
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| Q |
115 |
tagctaatgcatagaagccaatccattcatctctatcatattgctttaatcccaaggcagagattctagtctagtatatcaattatgt |
202 |
Q |
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| T |
17688252 |
taactaatgcatagaagccaatccattcatctctgtcatattgctttaatcccaaggcagagattctagtctagtatatcaattatgt |
17688165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 37983598 - 37983406
Alignment:
| Q |
10 |
gtgagaagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983598 |
gtgaaaagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaact |
37983499 |
T |
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| Q |
110 |
tgtggtagctaatgcatagaagccaatccattcatctctatcatattgctttaatcccaaggcagagattctagtctagtatatcaattatgt |
202 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37983498 |
tgtggtaactaatgcatagaagccaatccattcatctctgtcatattgctttaatcccaaggcagagattctagtctagtatatcacttatgt |
37983406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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