View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7246_high_37 (Length: 208)

Name: NF7246_high_37
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7246_high_37
NF7246_high_37
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-198)||(8966-9161)
[»] chr7 (1 HSPs)
chr7 (1-198)||(16420254-16420449)
[»] chr8 (1 HSPs)
chr8 (1-198)||(5538316-5538515)
[»] chr3 (1 HSPs)
chr3 (5-162)||(19932296-19932453)
[»] chr1 (5 HSPs)
chr1 (5-162)||(18901508-18901672)
chr1 (5-76)||(51784714-51784783)
chr1 (123-162)||(51784794-51784833)
chr1 (149-191)||(18901445-18901487)
chr1 (158-191)||(51784859-51784892)
[»] chr5 (2 HSPs)
chr5 (5-147)||(37940370-37940512)
chr5 (149-191)||(37940550-37940592)


Alignment Details
Target: scaffold0003 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 9161 - 8966
Alignment:
Q  1 ctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  9161 ctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacgccaatcacttcctttgct 9062  T
Q  101 ctatgcttccttttgttttcttactttcttgctaatcttattatatattactctaataaatactagctagtaatatctagtagcacatattcttcgac 198  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  9061 ctatgcttccttttgttttcctactttcttgctaatcttatt--atattactctaataaatactagctagtaatatctagtggcacatatttttcgac 8966  T

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Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16420449 - 16420254
Alignment:
Q  1 ctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  16420449 ctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatctttatttccacacgccaatcacttcctttgct 16420350  T
Q  101 ctatgcttccttttgttttcttactttcttgctaatcttattatatattactctaataaatactagctagtaatatctagtagcacatattcttcgac 198  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  16420349 ctatgcttccttttgttttcctactttcttgctaatcttatt--atattactctaataaatactagctagtaatatctagtggcacatatttttcgac 16420254  T

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Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 5538316 - 5538515
Alignment:
Q  1 ctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcc-tttgc 99  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  5538316 ctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacacg-caatcacttccttttgc 5538414  T
Q  100 tctatgcttccttttgttttcttactttcttgctaatcttat--tatatattactctaataaatactagctagtaatatctagtagcacatattcttcga 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  5538415 tctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatactagctagtaatatctaatggcacatatttttcga 5538514  T

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Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 19932453 - 19932296
Alignment:
Q  5 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgctctat 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||| ||||||    
T  19932453 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccactagtcaatcagttccttttctctat 19932354  T
Q  105 gcttccttttgttttcttactttcttgctaatcttattatatattactctaataaata 162  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||    
T  19932353 gcttccttttgctttcctactttattgctaatcttattatatattactttaataaata 19932296  T

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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 18901672 - 18901508
Alignment:
Q  5 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgttta-------tttccacatgccaatcacttccttt 97  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||  | |||||| |||||||    
T  18901672 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttt 18901573  T
Q  98 gctctatgcttccttttgttttcttactttcttgctaatcttattatatattactctaataaata 162  Q
     ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||    
T  18901572 tctctatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaata 18901508  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 51784714 - 51784783
Alignment:
Q  5 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttc 76  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  51784714 cactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgt--atgtttatttc 51784783  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 51784794 - 51784833
Alignment:
Q  123 actttcttgctaatcttattatatattactctaataaata 162  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  51784794 actttcttgctaatcttattatatattactttaataaata 51784833  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 18901487 - 18901445
Alignment:
Q  149 tactctaataaatactagctagtaatatctagtagcacatatt 191  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  18901487 tactctaataaatactagctagtaatatctagtgtcacatatt 18901445  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 51784859 - 51784892
Alignment:
Q  158 aaatactagctagtaatatctagtagcacatatt 191  Q
    |||||||||||||||||||||||| |||||||||    
T  51784859 aaatactagctagtaatatctagtggcacatatt 51784892  T

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Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 37940370 - 37940512
Alignment:
Q  5 cactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttatttccacatgccaatcacttcctttgctctat 104  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |  ||||| |||||||   ||||    
T  37940370 cactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaaacgtggatgtttatttccactagttaatcagttcctttttcctat 37940469  T
Q  105 gcttccttttgttttcttactttcttgctaatcttattatata 147  Q
    ||||| ||||| || | ||||||||||||||||||||||||||    
T  37940470 gcttctttttgcttacctactttcttgctaatcttattatata 37940512  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 37940550 - 37940592
Alignment:
Q  149 tactctaataaatactagctagtaatatctagtagcacatatt 191  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  37940550 tactctaataaatactagctagtaatatctagtggcacatatt 37940592  T

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