View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7246_high_5 (Length: 732)
Name: NF7246_high_5
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 681; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Original strand, 13068698 - 13069405
Alignment:
| Q |
1 |
acaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccattgtgaatagcatcaattatttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068698 |
acaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccattgtgaatagcatcaattatttttc |
13068797 |
T |
|
| Q |
101 |
tagtataacttagtttgatacgattcccggtaccatagctgcattaatttgacacagacaagaacatcatgtttagcgcgaaaaaacaaagaaactcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068798 |
tagtataacttagtttgatacgattcccggtaccatagctggattaatttgacatagacaagaacatcatgtttagcgcgaaaaaacaaagaaactcaac |
13068897 |
T |
|
| Q |
201 |
aatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccagtgttaacaagccaccctgttgcaccatgactctccatcttttcagcaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068898 |
aatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccagtgttaacaagccaccctgttgcaccatgactctccatcttttcagcaagc |
13068997 |
T |
|
| Q |
301 |
attgcagcatactttgtagggtgtaacattatgaatgctgcaccgaaacaagcagaaaatgttgcttgtggctcctttataccatcctcagtaccagcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13068998 |
attgcagcatactttgtagggtgtaacattatgaatgctgcaccgaaacaagcagaaaatgttgcttgtggctcctttataccatcctcagtaccagcca |
13069097 |
T |
|
| Q |
401 |
cctacataaaaatggttagaatcatataactgaagcaacattggtttagcaaatagtaaaaattagtgagaactgagaatgaaatttattaccagagcag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
13069098 |
cctacataaaaatggttagaatcatataactgaagcaacattggtttagcaaatagtaaaaattag-------tgagaatgaaatttattaccagagcag |
13069190 |
T |
|
| Q |
501 |
tatatccactgatgaaatggtacatggtctgcgccagggttagcttactcacaggtggtagcacaccaaatgcatcacatgccaaaagaataacattctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13069191 |
tatatccactgatgaaatggtacatggtctgcgccagggttagcttactcacaggtggtagcacaccaaatgcatcacatgccaaaagaataacattctt |
13069290 |
T |
|
| Q |
601 |
tggatgaggtccaacacatggtaactttgcatttggtatgtactctataggataggctgcacgagtattttctgcaataaaaaattaccgcatgtaacta |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069291 |
tggatgaggtccaacacatggtaactttgcatttggtatgtactctataggataggctgcacgagtattttctgcaataaaaaattaccgcatgtaacta |
13069390 |
T |
|
| Q |
701 |
tcagcagagatatat |
715 |
Q |
| |
|
||||||||||||||| |
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|
| T |
13069391 |
tcagcagagatatat |
13069405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 715
Target Start/End: Original strand, 12994049 - 12994756
Alignment:
| Q |
1 |
acaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccattgtgaatagcatcaattatttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12994049 |
acaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccattgtgaatagcatcaattatttttc |
12994148 |
T |
|
| Q |
101 |
tagtataacttagtttgatacgattcccggtaccatagctgcattaatttgacacagacaagaacatcatgtttagcgcgaaaaaacaaagaaactcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12994149 |
tagtataacttagtttgatacgattcccggtaccatagctggattaatttgacatagacaagaacatcatgtttagcgcgaaaaaacaaagaaactcaac |
12994248 |
T |
|
| Q |
201 |
aatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccagtgttaacaagccaccctgttgcaccatgactctccatcttttcagcaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12994249 |
aatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccagtgttaacaagccaccctgttgcaccatgactctccatcttttcagcaagc |
12994348 |
T |
|
| Q |
301 |
attgcagcatactttgtagggtgtaacattatgaatgctgcaccgaaacaagcagaaaatgttgcttgtggctcctttataccatcctcagtaccagcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12994349 |
attgcagcatactttgtagggtgtaacattatgaatgctgcaccgaaacaagcagaaaatgttgcttgtggctcctttataccatcctcagtaccagcca |
12994448 |
T |
|
| Q |
401 |
cctacataaaaatggttagaatcatataactgaagcaacattggtttagcaaatagtaaaaattagtgagaactgagaatgaaatttattaccagagcag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
12994449 |
cctacataaaaatggttagaatcatataactgaagcaacattggtttagcaaatagtaaaaattag-------tgagaatgaaatttattaccagagcag |
12994541 |
T |
|
| Q |
501 |
tatatccactgatgaaatggtacatggtctgcgccagggttagcttactcacaggtggtagcacaccaaatgcatcacatgccaaaagaataacattctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12994542 |
tatatccactgatgaaatggtacatggtctgcgccagggttagcttactcacaggtggtagcacaccaaatgcatcacatgccaaaagaataacattctt |
12994641 |
T |
|
| Q |
601 |
tggatgaggtccaacacatggtaactttgcatttggtatgtactctataggataggctgcacgagtattttctgcaataaaaaattaccgcatgtaacta |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12994642 |
tggatgaggtccaacacatggtaactttgcatttggtatgtactctataggataggctgcacgagtattttctgcaataaaaaatcaccgcatgtaacta |
12994741 |
T |
|
| Q |
701 |
tcagcagagatatat |
715 |
Q |
| |
|
||||||||||||||| |
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|
| T |
12994742 |
tcagcagagatatat |
12994756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 8e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 488 - 684
Target Start/End: Original strand, 28136636 - 28136832
Alignment:
| Q |
488 |
attaccagagcagtatatccactgatgaaatggtacatggtctgcgccagggttagcttactcacaggtggtagcacaccaaatgcatcacatgccaaaa |
587 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||||| ||||| | || | |||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
28136636 |
attaccaaagctgtatatccactgatgaaatgatacattgtctgtgacaagcttagcttactaacaggtggaagcacaccaaatgcatcacatgccaaaa |
28136735 |
T |
|
| Q |
588 |
gaataacattctttggatgaggtccaacacatggtaactttgcatttggtatgtactctataggataggctgcacgagtattttctgcaataaaaaa |
684 |
Q |
| |
|
| || ||||||||||| ||||| |||||||||||||||||||| || || |||||||| || ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
28136736 |
gtatgacattctttgggtgaggaccaacacatggtaactttgcgttaggaatgtactcaattggataagctgcacgagtattttctgcaatacaaaa |
28136832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 226 - 403
Target Start/End: Original strand, 28136220 - 28136397
Alignment:
| Q |
226 |
gcatacctgccaccggaccaaccagtgttaacaagccaccctgttgcaccatgactctccatcttttcagcaagcattgcagcatactttgtagggtgta |
325 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| || || ||||||||| | | ||| |||||||||||||| || |||||||||||||| |||| |
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|
| T |
28136220 |
gcataccttccaccagaccaaccagtgttaacaagccatccagtagcaccatgattttgcattttttcagcaagcatggctgcatactttgtaggatgta |
28136319 |
T |
|
| Q |
326 |
acattatgaatgctgcaccgaaacaagcagaaaatgttgcttgtggctcctttataccatcctcagtaccagccacct |
403 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || || || |||||||||| |
|
|
| T |
28136320 |
gcattatgaatgctgctccaaaacaagccgaaaatgttgcttgtggctcctttataccctcttctgtgccagccacct |
28136397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 241 - 404
Target Start/End: Original strand, 51933948 - 51934111
Alignment:
| Q |
241 |
gaccaaccagtgttaacaagccaccctgttgcaccatgactctccatcttttcagcaagcattgcagcatactttgtagggtgtaacattatgaatgctg |
340 |
Q |
| |
|
||||| ||||| || |||||||| || || || ||||| ||| |||||| ||||| ||||| | |||||| || ||||| || | |||||| ||||||| |
|
|
| T |
51933948 |
gaccagccagtattgacaagccatccagtagctccatgcttctgcatcttctcagccagcatcgtagcatatttggtaggatgcatcattataaatgctg |
51934047 |
T |
|
| Q |
341 |
caccgaaacaagcagaaaatgttgcttgtggctcctttataccatcctcagtaccagccaccta |
404 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
51934048 |
caccgaaacaagcagaaaatgtagcttgtggctcttttataccatcttctgtcccagcaaccta |
51934111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 500 - 677
Target Start/End: Original strand, 51934245 - 51934422
Alignment:
| Q |
500 |
gtatatccactgatgaaatggtacatggtctgcgccagggttagcttactcacaggtggtagcacaccaaatgcatcacatgccaaaagaataacattct |
599 |
Q |
| |
|
||||| |||||||| ||||||||||| || || |||| | | ||||| || || || || || || |||||||||||||| || | ||| || ||||||| |
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|
| T |
51934245 |
gtatagccactgataaaatggtacattgtttgggccaagctcagcttgcttactggggggagtaccccaaatgcatcacaagctagaaggatgacattct |
51934344 |
T |
|
| Q |
600 |
ttggatgaggtccaacacatggtaactttgcatttggtatgtactctataggataggctgcacgagtattttctgcaa |
677 |
Q |
| |
|
||| ||| || |||||||||||| | | ||||| |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
51934345 |
ttgcatggggagcaacacatggtatcctagcattaggtatgtactctataggatacgctgcacgagtattctctgcaa |
51934422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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