View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_high_7 (Length: 556)
Name: NF7246_high_7
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 22 - 417
Target Start/End: Complemental strand, 48853443 - 48853054
Alignment:
| Q |
22 |
cagttatgggtgtgaattgagaggttgtgtcaatagagggctagcgaaaaacaagcaagcaaaactacaaccatctgacgaacccaagctccatttggca |
121 |
Q |
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| T |
48853443 |
cagttatgggtgtgaattgagaggttgtgtcaatagagg-ctagcgaaaaacaagcaagcaaaactacaaccatctgacgaacacaagctccatttggca |
48853345 |
T |
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| Q |
122 |
aaggaaaggtacagaccctctctcccacacacacctgcggagaaggnnnnnnnnnnnnnnnntcttagatacgttgtgaatatttatgaacagattaatc |
221 |
Q |
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| T |
48853344 |
aaggaaaggtacagaccctctctcccacacacacctgcggagaaggaaaaaaaaaaaaa---tcttagatacgttgtgaatatttatgaacagattaatc |
48853248 |
T |
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| Q |
222 |
aatttatgcacatgaacatgaaagaaagagattttctgtcgcaaaaatttaaagaaatgttacatgtatatgtatatcagggactgtaactccataaaat |
321 |
Q |
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| T |
48853247 |
aatttatgcacatgaacatgaaagaaagagattttctgtcacaaaaatttaaagaaatgttacatgtatatgtatatcagggactgtaactccataaaat |
48853148 |
T |
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| Q |
322 |
tctaacagaaaccaatttcaagcattttctgcaaattgataagcaagtgcatagattatgaactaaacaatgaagacatagatagaaaatcgataa |
417 |
Q |
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| T |
48853147 |
tctaacagaatccaatttcaagcattttctgcaaattgataagcaagtgcat--attataaactaagcaatgaagacatagatagaaaatcgataa |
48853054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 429 - 547
Target Start/End: Complemental strand, 48853067 - 48852949
Alignment:
| Q |
429 |
tagaaaatcgataagctggtttttgctcttcttgcaacttctcaaggacacacaaggaaatgagcattcaaattacaaatcaattacaaaatattcaatg |
528 |
Q |
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| T |
48853067 |
tagaaaatcgataagctggtttttgctcttcttgcaacttctcaaggacacacaaggaaatgagcattcaaattacaaatcaattacaaaatattcaatg |
48852968 |
T |
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| Q |
529 |
aatacaattatgttcatct |
547 |
Q |
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| T |
48852967 |
aatacaattatgttcatct |
48852949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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