View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7246_low_14 (Length: 407)
Name: NF7246_low_14
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 393
Target Start/End: Complemental strand, 52314729 - 52314343
Alignment:
| Q |
7 |
cctagaattttacaatgggtgcaaaaagagggttgttattcatattgtactgaaaccgacaaagcgtgtccttcccgttccacaataacagtgtcaaata |
106 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||| | |
|
|
| T |
52314729 |
cctagcattttacaatgagtgcaaaaagagggttgttgttcatattgtaccgaaaccgacaaagtgtgtccctcccgtcccacaataacagtgtcaaaca |
52314630 |
T |
|
| Q |
107 |
gttgctcggataagtccacatcaattaaaacacgtgcaaagaggccaaagtgcttgtgcatagtagcatcatctataatcaaaggtgttccaagaccaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
52314629 |
gttgctcggataagtccacatcaattaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatctataatcaaaggcgttcaaagaccaga |
52314530 |
T |
|
| Q |
207 |
agcagtttccaagagagttgtcttgcgccaatattcttgaggcaaacgtaaaagtcgtacgcaaatctgggcatgagtctgaacttatgtttgagtatca |
306 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
52314529 |
agcaatttccaagagagttgtcttgcg-caatattcctgaggcaagcgtaaaagtcgtacccaaatctgggcatgagtctgaacctgtgtttgagtatca |
52314431 |
T |
|
| Q |
307 |
aagtcactcgaccagc-aaaaaacctcatcaatccaggcttcaaattcaccatcgccatagcccaaattttcctcatatcctccactg |
393 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
52314430 |
aagtcactcgaccaacaaaaaaaccttatcaatccaggcttcaaattcaccgtccccatagcccaaattttcctcatatcctccactg |
52314343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 43689099 - 43688706
Alignment:
| Q |
1 |
tcatgccctagaattttacaatgggtgcaaaaagagggttgttattcatattgtactgaaaccgacaaagcgtgtccttcccgttccacaataacagtgt |
100 |
Q |
| |
|
||||| ||||| || |||||||| | | ||||||| || |||| ||| |||| | ||||| |||||||||||||| |||||||||||||||| ||| | |
|
|
| T |
43689099 |
tcatgtcctagcatcttacaatgagagtaaaaagacggatgttgttcgcattgcatcgaaactgacaaagcgtgtccctcccgttccacaataatagttt |
43689000 |
T |
|
| Q |
101 |
caaatagttgctcggataagtccacatcaattaaaacacgtgcaaagaggccaaagtgcttgtgcatagtagcatcatctataatcaaaggtgttccaag |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
43688999 |
taaatagttattcggataagtccacatcaatcaaaacacgtgcaaagaggccaaagcgcctgtgcatagtagcatcatcgataatcaaaggcgttccaag |
43688900 |
T |
|
| Q |
201 |
accagaagcagtttccaagagagttgtcttgcgccaatattcttgaggcaaacgtaaaagtcgtacgcaaatctgggcatgagtctgaacttatgtttga |
300 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||| | ||||||| |
|
|
| T |
43688899 |
accataagcaatttccaagagagttgtcttgcgccaatattcttggggcaagcgtaaaagtcgtacccaaatctaagcatgagtctgaacctgtgtttga |
43688800 |
T |
|
| Q |
301 |
gtatcaaagtcactcgaccagcaa-aaaacctcatcaatccaggcttcaaattcaccatcgccatagcccaaattttcctcatatcctccactg |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
43688799 |
gtatcaaagtcactcgaccagcaaaaaaaccttatcaacccagacttcaaattcaccgtccccatagcccaaattttccgcatatcctccactg |
43688706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 41113224 - 41112847
Alignment:
| Q |
13 |
attttacaatgggtgcaaaaagagggttgttattcatattgtactgaaaccgacaaagcgtgtccttcccgttccacaataacagtgtcaaatagttgct |
112 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| ||||||| |||| ||||| |||||||| || ||||||||||||| ||| ||||| ||||||| |
|
|
| T |
41113224 |
attttacaatgagtgcaaaa-gagggttgttgttcgtattgtatcgaaattgacaaggcgtgtccctcgcgttccacaataatagtttcaaacagttgct |
41113126 |
T |
|
| Q |
113 |
cggataagtccacatcaattaaaacacgtgcaaagaggccaaagtgcttgtgcatagtagcatcatctataatcaaaggtgttccaagaccagaagcagt |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
41113125 |
cggataagtccacatcaatcaaaacacgtgcaaagagtccaaagcgtctgtgcatagtagcatcatctataatcagaggcgttccaagaccagaagcaat |
41113026 |
T |
|
| Q |
213 |
ttccaagagagttgtcttgcgccaatattcttgaggcaaacgtaaaagtcgtacgcaaatctgggcatgagtctgaacttatgtttgagtatcaaagtca |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||| || ||||| ||||| | |||||||||||||||||| |
|
|
| T |
41113025 |
ttccaaaagagttgtcttgcgccaatattcccgaggcaagcgtaaaagccgtacccaaatctgagcgtgagtttgaacctgtgtttgagtatcaaagtct |
41112926 |
T |
|
| Q |
313 |
ctcgaccagc-aaaaaacctcatcaatccaggcttcaaattcaccatcgccatagcccaaattttcctcatatcctcca |
390 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
41112925 |
ctcgaccaacaaaaaaagctcatcaatccaggcttcaaattcaccgtccccatagcccaaattttccgtatatcctcca |
41112847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 2192118 - 2191725
Alignment:
| Q |
1 |
tcatgccctagaattttacaatgggtgcaaaaagagggttgttattcatattgtactgaaaccgacaaagcgtgtccttcccgttccacaataacagtgt |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||| ||||| || |||| |||||| |||||||||||||||||||| | |
|
|
| T |
2192118 |
tcatgtcctagcattttacaatgagtgcaaaaagagggttgttgttcgtattgtaccgaaactgaaaaagtgtgtccatcccgttccacaataacagttt |
2192019 |
T |
|
| Q |
101 |
caaatagttgctcggataagtccacatcaattaaaacacgtgcaaagaggccaaagtgcttgtgcatagtagcatcatctataatcaaaggtgttccaag |
200 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2192018 |
caaacagttgctcggataagcccacatcaatcaaaacacgtgcaaagagaccaaagcgcttgtgcatagtagcatcatctataatcaaaggcgttccaag |
2191919 |
T |
|
| Q |
201 |
accagaagcagtttccaagagagttgtcttgcgccaatattcttgaggcaaacgtaaaagtcgtacgcaaatctgggcatgagtctgaacttatgtttga |
300 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||||||| |||||||| ||||||| | ||| ||||||||||| |||||| |||||| || |||| |
|
|
| T |
2191918 |
accaaaggcaatttccaagagagttgtcttgcgccaatattcctgaggcaagcgtaaaaaccttacccaaatctgggcgtgagtcggaacttgtgattga |
2191819 |
T |
|
| Q |
301 |
gtatcaaagtcactcgaccagc--aaaaaacctcatcaatccaggcttcaaattcaccatcgccatagcccaaattttcctcatatcctccact |
392 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||| ||||| | ||||||||| || |||||||||||||||| | ||||||||||||| |
|
|
| T |
2191818 |
gtatcaaagtcactcgtccagcagaaaaaaactcatcaagccaggtctaaaattcaccgtccccatagcccaaatttttcgcatatcctccact |
2191725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 34162408 - 34162752
Alignment:
| Q |
1 |
tcatgccctagaattttacaatgggtgcaaaaagagggttgttattcatattgtactgaaaccgacaaagcgtgtccttcccgttccacaataacagtgt |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||||||| ||| ||||| || || || ||||| | |||||| ||| |||||||||||||||| | |
|
|
| T |
34162408 |
tcatgtcctagcattttacaatgagtgcaaaaagagggttgttgttcgtattgcaccgagactgacaacgtgtgtccctcctgttccacaataacagttt |
34162507 |
T |
|
| Q |
101 |
caaatagttgctcggataagtccacatcaattaaaacacgtgcaaagaggccaaagtgcttgtgcatagtagcatcatctataatcaaaggtgttccaag |
200 |
Q |
| |
|
| || |||||||| |||||||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34162508 |
cgaacagttgctcatataagtccacatcaatcaaaacacgtgcaaagaggccaaagcacctgggcatagtagcatcatctataatcaaaggtgtgccaag |
34162607 |
T |
|
| Q |
201 |
accagaagcagtttccaagagagttgtcttgcgccaatattcttgaggcaaacgtaaaagtcgtacgcaaatctgggcatgagtctgaacttatgtttga |
300 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| | |||||||||| ||||||| |||||||||||||| ||||| || || ||||||||||| | ||||| | |
|
|
| T |
34162608 |
actagaagcaatttccaagagagttgtcttacaccaatattctcgaggcaagcgtaaaagtcgtacccaaatttgagcgtgagtctgaacctgtgtttaa |
34162707 |
T |
|
| Q |
301 |
gtatcaaagtcactcgaccagc-aaaaaacctcatcaatccaggct |
345 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34162708 |
gtatcacagtcact-gaccagcaaaaaaacctcatcaatccaggct |
34162752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University