View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_16 (Length: 403)
Name: NF7246_low_16
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 53 - 387
Target Start/End: Complemental strand, 46768386 - 46768030
Alignment:
| Q |
53 |
cctcaagactaaactcccaattctgaacaccaaagctaagccacctctaactcccatcatcacatcacattt----------------------atgaaa |
130 |
Q |
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| T |
46768386 |
cctcaagactaaactcccaatcctgaacaccaaagctaagccacctctaactcctatcatcacatcacatttgtgtacaattatctctctttttatgaaa |
46768287 |
T |
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| Q |
131 |
atgcttttaaaacaataccctgaagtaattattgtggattgcagagcacttagtttaccctcctcagtcctcaccagtaacttctgttggctgtatgcat |
230 |
Q |
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| T |
46768286 |
atgcttttaaaacaataccctgaagtaattattgtggattgcagagcacttagtttaccctcctcagtcctcaccagtaacttctgttggctgtatgcat |
46768187 |
T |
|
| Q |
231 |
tgtgacatatttagtaaccagttagtattacacaactaattttttgatattgcatgttatgtatccacattttcttcttaaatattattgttgtgttttg |
330 |
Q |
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| T |
46768186 |
tgtgacatatttagtaaccagttagtattacacaactaattttttgatattgcatgttatgtatccacattttcttcttaaatattattgttgtgttttg |
46768087 |
T |
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| Q |
331 |
atgttatgtttagttttataaaaggtgtatttaacagttgacagacaacactgatgt |
387 |
Q |
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| T |
46768086 |
atgttatgtttagttttataaaaggtgtatttaacagttgacagacaacactgatgt |
46768030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 35045775 - 35045709
Alignment:
| Q |
288 |
tatgtatccacattttcttcttaaatattattgttgtgttttgatgttatgtttagttttataaaag |
354 |
Q |
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| T |
35045775 |
tatgtattcacattgttttctaaaacatcattgttgtgttttgatgtgatgtttagttttataaaag |
35045709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 40161150 - 40161106
Alignment:
| Q |
310 |
aaatattattgttgtgttttgatgttatgtttagttttataaaag |
354 |
Q |
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| T |
40161150 |
aaatattattgatgtgttttgatgttatctttagctttataaaag |
40161106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 28843235 - 28843296
Alignment:
| Q |
310 |
aaatattattgttgtgttttgatgttatgtttagttttataaaaggtgtatttaacagttga |
371 |
Q |
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| T |
28843235 |
aaatattatagatgtgttttaatattatgtttagatttataaaagaggtacttaacagttga |
28843296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 43539041 - 43538958
Alignment:
| Q |
270 |
ttttttgatattgcatgttatgtatccacattttcttcttaaatattattgttgtgttttgatgttatgtttagttttataaaa |
353 |
Q |
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||||||||||| |||| ||||| || |||||| |||||||| ||||||| |||||||| |||||| ||||| ||||||||| |
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| T |
43539041 |
ttttttgatatagcatattatggattcacattgctttcttaaacattattgacgtgttttggtgttatatttagctttataaaa |
43538958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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