View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_18 (Length: 347)
Name: NF7246_low_18
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 98 - 332
Target Start/End: Complemental strand, 29209095 - 29208861
Alignment:
| Q |
98 |
aactcattagtactgaattaaagagacctatctcctttatacataagtcggatttgggccgaaccgggtgaacaaatatcaccgtgttgttcttcttttt |
197 |
Q |
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| T |
29209095 |
aactcattagtactgaattaaagagatctatctcctttatacataagtcgaatttgggtcgaaccgggtgaacaaatatcaccgtgttgttcttcttttt |
29208996 |
T |
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| Q |
198 |
gttctactttatcttattttattgtatatatgtgtttgtttgatctcgttggtttgcttggtgctaattttgctccacacatcaaaccattggtttgagt |
297 |
Q |
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| T |
29208995 |
gttctactttatcttattttattgtatgtatgtgtttggttgatttcgttggtttgattggtgctaatttttctccacacatcaaaccattggtttgagt |
29208896 |
T |
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| Q |
298 |
tttgatacgaattcacaacaactactgcgagcaca |
332 |
Q |
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| T |
29208895 |
tttgatacgaattcacaacaactaatgcgagcaca |
29208861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29209219 - 29209152
Alignment:
| Q |
1 |
gtgtccaacacta--cttatgttgttgctcttagctaatgattctagcattttacgcttctcccaagc |
66 |
Q |
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| T |
29209219 |
gtgtccaacactatacttatgttgttgctcttagctaatgattctatcgttttatgcttctcccaagc |
29209152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 31649898 - 31649965
Alignment:
| Q |
250 |
tttgcttggtgctaattttgctccacacatcaaaccattggtttgagttttgatacgaattcacaaca |
317 |
Q |
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| T |
31649898 |
tttggttgctgctatttttgctccacacatcaaaatattggtgtgagttttgatccgaactcacaaca |
31649965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 3904387 - 3904451
Alignment:
| Q |
249 |
gtttgcttggtgctaattttgctccacacatcaaaccattggtttgagttttgatacgaattcaca |
314 |
Q |
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| T |
3904387 |
gtttgattgctgctaattttgctctacacatcaaagtattggtgtgagttttaat-cgaattcaca |
3904451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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