View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_19 (Length: 330)
Name: NF7246_low_19
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 122 - 310
Target Start/End: Complemental strand, 38030097 - 38029909
Alignment:
| Q |
122 |
aagaaacaagattatatattatactaacatctaagccttctaaacgtgtttgttccacaggccttcttgctgatcattaccactcttcaagatcagttcc |
221 |
Q |
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| T |
38030097 |
aagaaacaagattatatattatactaacatctaagccttctaaacgcgtttgttccataggccttcttgctgatcattaccactcttcaagatcagttcc |
38029998 |
T |
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| Q |
222 |
ttaatttccagcggaggtttctttttccactcctttgcacgctcccatcttgccagcctcgtcatcccaatggaaggcccataatccat |
310 |
Q |
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| T |
38029997 |
ttaatttcctgcggaggattcatatcccacttctttgcacgctcccatcgttccagcctcgtcagcccaatgctaggcccataatccat |
38029909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 38030232 - 38030111
Alignment:
| Q |
18 |
caacattcacttaacagccaattaacatc-gataaaacttgtgtaacaaaacacactaaccgaaactgattttcccaaagaaaaatctaagcaagaaggt |
116 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
38030232 |
caacattcacttaagagccaattaacatttgataaaacttgtaaaacaaaacacactaacagaaactgattttccctaagaaaaatctaaacaaaaaggt |
38030133 |
T |
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| Q |
117 |
ccataaagaaacaagattatat |
138 |
Q |
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| T |
38030132 |
ccataaagaaacaagattatat |
38030111 |
T |
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