View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_23 (Length: 296)
Name: NF7246_low_23
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 18781463 - 18781185
Alignment:
| Q |
1 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
18781463 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctccgatctctctgtcttctatcggtgtg |
18781364 |
T |
|
| Q |
101 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18781363 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacagacaatgcttcatctatggcaccgtcgactttatctttggcaacgc |
18781264 |
T |
|
| Q |
201 |
cgcagcagtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggt |
279 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18781263 |
cgcagtagtgttccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggt |
18781185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 1623769 - 1623491
Alignment:
| Q |
1 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtg |
100 |
Q |
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||||| || ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
1623769 |
attgcacgtgacattacctttcaaaatactgctggtcctcacaaaggccaagctgtggcgctccgatcagcctccgatctctctgtcttctatcggtgtg |
1623670 |
T |
|
| Q |
101 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgc |
200 |
Q |
| |
|
||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1623669 |
ctatatcgggctatcaagacactctgatggctcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgc |
1623570 |
T |
|
| Q |
201 |
cgcagcagtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggt |
279 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
1623569 |
tgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggt |
1623491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 10820753 - 10821031
Alignment:
| Q |
1 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||| || || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
10820753 |
attgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctccgatcagcctctgatctctccgtcttctaccggtgta |
10820852 |
T |
|
| Q |
101 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgc |
200 |
Q |
| |
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| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10820853 |
caatatcgggttaccaagacaccctcatggctcatgcacaacgtcaattttacagacaatgcttcatctatggcaccgtagacttcatctttggcaacgc |
10820952 |
T |
|
| Q |
201 |
cgcagcagtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggt |
279 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
10820953 |
tgcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggt |
10821031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 1629945 - 1629667
Alignment:
| Q |
1 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||| || || ||||||||||||||||| ||||||| || |||||||| || ||||| ||||||| |
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| T |
1629945 |
attgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcgtccgatctctcagttttctatcggtgtg |
1629846 |
T |
|
| Q |
101 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgc |
200 |
Q |
| |
|
| ||||| || || |||||||| || ||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1629845 |
ccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaacgc |
1629746 |
T |
|
| Q |
201 |
cgcagcagtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggt |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1629745 |
cgcagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggt |
1629667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 1606647 - 1606369
Alignment:
| Q |
1 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtg |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||| || || |||||||| |||||||| |||||||||| |||||||| || ||||| ||||||| |
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| T |
1606647 |
attgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctaagatcagcctccgatctctcagttttctatcggtgtg |
1606548 |
T |
|
| Q |
101 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgc |
200 |
Q |
| |
|
| ||||| || || |||||||| || ||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
1606547 |
ccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgc |
1606448 |
T |
|
| Q |
201 |
cgcagcagtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggt |
279 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| |
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|
| T |
1606447 |
cgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggt |
1606369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 2576071 - 2576132
Alignment:
| Q |
166 |
atctatggcaccgtagactttatctttggcaacgccgcagcagtattccaaaattgtaacat |
227 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| || | ||| ||||||||||||||||| |
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|
| T |
2576071 |
atctatggcaccgtcgacttcattttcggcaacgcagctgtagttttccaaaattgtaacat |
2576132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 12802984 - 12802751
Alignment:
| Q |
46 |
ggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtc |
145 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || || |||||||||||||| ||| | | ||||||||||||||||| |||| || || ||||||| |
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|
| T |
12802984 |
ggtcaagcagtggcgcttcgatcagcctctgacctatctgtcttctaccgttgttcctttaaaggctaccaagacaccctcatggttcacgcacaacgtc |
12802885 |
T |
|
| Q |
146 |
aattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgccgcagcagtattccaaaattgtaacattttcgcaagaaagccttt |
245 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||| ||||| |||||||||||||| || | ||| |||||||| || | ||| | | |||| |||||| |
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|
| T |
12802884 |
aattttacagagaatgttacatctatggcaccgttgacttcatctttggcaacgcagccgtagttttccaaaactgcatgattcttgttagaaggccttt |
12802785 |
T |
|
| Q |
246 |
agatggccaagcaaacatgatcacggcccaaggt |
279 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |
|
|
| T |
12802784 |
aaacggccaagcaaacatgatcacggcccaaggt |
12802751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 8767036 - 8767130
Alignment:
| Q |
145 |
caattttacaggcaatgcttcatctatggcaccgtagactttatctttggcaacgccgcagcagtattccaaaattgtaacattttcgcaagaaa |
239 |
Q |
| |
|
||||||||||| |||| |||||||||||| || || || |||||||| |||||||| | ||| || |||||||||||||||||||||||||| |
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| T |
8767036 |
caattttacagagaatgtaacatctatggcacagttgatttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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