View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_29 (Length: 247)
Name: NF7246_low_29
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_29 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 4234795 - 4235026
Alignment:
| Q |
16 |
acatcagcctccaaaaagaatgaggcaaaacgccttcaatcatcacccaaatctttgacgctggagcaccatcacaaaaagcacaacatatagtttccat |
115 |
Q |
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| T |
4234795 |
acatcagcctccaaaaagaatgaggcaaaacgccttcaatcatcacccaaatctttgacgccggagcaccatcacaaaaagcacaacatatagtttccat |
4234894 |
T |
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| Q |
116 |
cgacacactgcacattaaatacgacgcatcaactgtcacctccaatagcttcttctgtcattcgtcgtgatacaaccactaaaagaaacacacccagcat |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4234895 |
cgacacactgcacattaaatacgacgcatcaattgtcacctccaatagcttcttctgtcattcgtcgtgatacaaccactaaaagaaacacacccagcat |
4234994 |
T |
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| Q |
216 |
ttctggattagttcaactcgacgagaaatctt |
247 |
Q |
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|||||||||||||||||| ||||||||||||| |
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| T |
4234995 |
ttctggattagttcaacttgacgagaaatctt |
4235026 |
T |
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