View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_31 (Length: 244)
Name: NF7246_low_31
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 35413158 - 35413310
Alignment:
| Q |
20 |
tttctgctggtgtgtgctgctgtccttgctgttcttgtgcagcagtttggtttccctctgttggtgtgtctcggcctgttcattggtgaggcaggggtat |
119 |
Q |
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| T |
35413158 |
tttctactggtgtgtgctgctgtcgttgctgttcttgtgcagcagttcggtttccctatgttggtgagtctcggcctgttcattggtgaggcaggggtat |
35413257 |
T |
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| Q |
120 |
gcttggtgttagcaagtatatctcgacctcattgcttgatgccttttttatct |
172 |
Q |
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| T |
35413258 |
gcttggtgttagcaagtatatctcagcctcatcgcttgatgccatttttatct |
35413310 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 4787900 - 4787844
Alignment:
| Q |
106 |
tgaggcaggggtatgcttggtgttagcaagtatatctcgacctcattgcttgatgcc |
162 |
Q |
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| T |
4787900 |
tgaggcaggggtatgcttggtgctaacaagtatatttcggcctcatttcttgatgcc |
4787844 |
T |
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