View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7246_low_34 (Length: 240)
Name: NF7246_low_34
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7246_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40440154 - 40440377
Alignment:
| Q |
1 |
catcaagcacgttcaaagcaagcatcaagcacaatccaagaaactcttgcaaattcccacacaaaaatgtctagttcgaaggctatgaacaacaatgatc |
100 |
Q |
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| T |
40440154 |
catcaagcacgttcaaagcaagcatcaagcacaatccaagaaactcttgcaaattcccacacaaaaatgtcaagttcaaaggctatgaacaacaatgatc |
40440253 |
T |
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| Q |
101 |
atcaacttcatgtgttcatgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataac |
200 |
Q |
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| T |
40440254 |
atcaacttcatgtgttcatgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataac |
40440353 |
T |
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| Q |
201 |
tttcttatcagcttcatccaacat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40440354 |
tttcttatcagcttcatccaacat |
40440377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 40443262 - 40443400
Alignment:
| Q |
86 |
tgaacaacaatgatcatcaacttcatgtgttcatgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctca |
185 |
Q |
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| T |
40443262 |
tgaacaacaatgataagcaacttcatgtgatcatgtttccattccttgtatttggtcacattagtccttttgttcaattatcaaacaaattattctctca |
40443361 |
T |
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| Q |
186 |
aggagttcacataactttcttatcagcttcatccaacat |
224 |
Q |
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| T |
40443362 |
tggagttcgcgtaactttcttatcagcttcatcaaacat |
40443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 21840006 - 21840085
Alignment:
| Q |
118 |
atgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacat |
197 |
Q |
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| T |
21840006 |
atgtttcccttcctagcatttggtcacattagtccatttgtgcaattatccaacaagttattctctcatggaattcacat |
21840085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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