View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7246_low_39 (Length: 203)

Name: NF7246_low_39
Description: NF7246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7246_low_39
NF7246_low_39
[»] chr5 (20 HSPs)
chr5 (14-187)||(38010617-38010790)
chr5 (14-187)||(29989957-29990130)
chr5 (14-181)||(13478054-13478221)
chr5 (20-176)||(13015382-13015538)
chr5 (14-176)||(13086748-13086910)
chr5 (14-187)||(13421013-13421186)
chr5 (39-187)||(10292893-10293039)
chr5 (19-187)||(33858542-33858709)
chr5 (20-187)||(11607538-11607704)
chr5 (20-189)||(1826260-1826428)
chr5 (20-187)||(19357266-19357431)
chr5 (63-146)||(37881185-37881268)
chr5 (20-125)||(9827789-9827894)
chr5 (20-137)||(39570097-39570213)
chr5 (35-187)||(33271630-33271781)
chr5 (14-81)||(35622811-35622878)
chr5 (14-65)||(35622939-35622990)
chr5 (74-137)||(42148201-42148263)
chr5 (149-187)||(42331073-42331111)
chr5 (39-81)||(38832920-38832962)
[»] chr3 (27 HSPs)
chr3 (14-187)||(47186170-47186343)
chr3 (13-187)||(31187073-31187247)
chr3 (13-187)||(42664667-42664841)
chr3 (15-187)||(34029294-34029466)
chr3 (19-132)||(50934500-50934613)
chr3 (20-187)||(44380255-44380421)
chr3 (20-141)||(47426351-47426471)
chr3 (18-145)||(33509679-33509805)
chr3 (32-187)||(37742738-37742892)
chr3 (11-72)||(21963073-21963134)
chr3 (71-181)||(6022998-6023115)
chr3 (20-85)||(10018671-10018736)
chr3 (27-127)||(35094554-35094655)
chr3 (14-81)||(53440541-53440608)
chr3 (14-81)||(42273329-42273396)
chr3 (14-81)||(46489764-46489831)
chr3 (21-87)||(32319468-32319534)
chr3 (21-115)||(39498744-39498838)
chr3 (20-85)||(10123211-10123276)
chr3 (20-69)||(43689404-43689453)
chr3 (14-65)||(46489652-46489703)
chr3 (20-85)||(10179868-10179933)
chr3 (13-74)||(34955067-34955128)
chr3 (42-137)||(17466296-17466390)
chr3 (22-65)||(53440669-53440712)
chr3 (14-59)||(6053733-6053778)
chr3 (124-172)||(25859019-25859067)
[»] chr4 (24 HSPs)
chr4 (14-187)||(52012773-52012946)
chr4 (20-187)||(9799366-9799533)
chr4 (13-162)||(47943152-47943302)
chr4 (28-177)||(21260803-21260951)
chr4 (20-187)||(12473705-12473871)
chr4 (20-187)||(12528114-12528280)
chr4 (19-145)||(33249420-33249545)
chr4 (20-137)||(35869625-35869741)
chr4 (42-112)||(46719953-46720023)
chr4 (20-145)||(22343338-22343462)
chr4 (20-113)||(52910126-52910219)
chr4 (104-179)||(46720200-46720276)
chr4 (20-136)||(51811915-51812030)
chr4 (20-96)||(55590483-55590559)
chr4 (19-105)||(34829168-34829254)
chr4 (20-116)||(49999662-49999758)
chr4 (12-81)||(54277631-54277700)
chr4 (14-81)||(28092852-28092919)
chr4 (14-65)||(28092740-28092791)
chr4 (23-78)||(49998486-49998541)
chr4 (13-59)||(36634529-36634575)
chr4 (39-88)||(41876402-41876452)
chr4 (39-80)||(36821713-36821754)
chr4 (85-143)||(33174581-33174636)
[»] chr6 (10 HSPs)
chr6 (14-187)||(34245562-34245735)
chr6 (20-186)||(11113557-11113718)
chr6 (19-189)||(1211846-1212015)
chr6 (20-187)||(5403880-5404046)
chr6 (24-140)||(32644888-32645002)
chr6 (14-81)||(12800356-12800423)
chr6 (20-84)||(11753168-11753232)
chr6 (21-61)||(7234489-7234529)
chr6 (118-174)||(10126546-10126602)
chr6 (151-187)||(17330519-17330555)
[»] chr1 (19 HSPs)
chr1 (14-187)||(8809643-8809816)
chr1 (20-181)||(35998253-35998414)
chr1 (20-145)||(29119370-29119494)
chr1 (20-145)||(32676137-32676261)
chr1 (26-178)||(35534413-35534561)
chr1 (20-145)||(2569038-2569161)
chr1 (20-116)||(6223052-6223148)
chr1 (20-112)||(25161310-25161402)
chr1 (15-80)||(18056134-18056199)
chr1 (32-168)||(8462141-8462276)
chr1 (20-77)||(5581281-5581338)
chr1 (20-53)||(16679835-16679868)
chr1 (39-80)||(31953826-31953867)
chr1 (48-111)||(3688917-3688980)
chr1 (71-156)||(16679744-16679829)
chr1 (129-174)||(17431709-17431754)
chr1 (20-53)||(46435590-46435623)
chr1 (60-112)||(8555470-8555522)
chr1 (21-81)||(18056027-18056087)
[»] chr8 (9 HSPs)
chr8 (14-167)||(1514798-1514951)
chr8 (20-187)||(41179567-41179733)
chr8 (26-137)||(18168392-18168503)
chr8 (26-137)||(18631949-18632060)
chr8 (20-187)||(24337834-24338000)
chr8 (27-145)||(4708353-4708470)
chr8 (19-172)||(32825854-32826006)
chr8 (20-137)||(11254082-11254197)
chr8 (14-77)||(40530522-40530585)
[»] chr2 (17 HSPs)
chr2 (38-178)||(10163501-10163641)
chr2 (20-187)||(34392085-34392251)
chr2 (88-187)||(3668013-3668112)
chr2 (22-121)||(7381695-7381794)
chr2 (20-115)||(21603960-21604055)
chr2 (33-181)||(23863813-23863958)
chr2 (24-136)||(14565908-14566019)
chr2 (20-123)||(37357988-37358091)
chr2 (75-180)||(41095797-41095901)
chr2 (12-81)||(37811084-37811153)
chr2 (48-127)||(4779614-4779692)
chr2 (20-181)||(4775635-4775796)
chr2 (16-60)||(3668346-3668390)
chr2 (70-137)||(25275676-25275741)
chr2 (22-81)||(37811198-37811257)
chr2 (118-170)||(43154124-43154176)
chr2 (118-170)||(43159344-43159396)
[»] chr7 (5 HSPs)
chr7 (20-179)||(35341537-35341695)
chr7 (20-140)||(48250155-48250274)
chr7 (20-187)||(48072390-48072554)
chr7 (23-112)||(31306951-31307041)
chr7 (83-137)||(32694624-32694677)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-168)||(34195-34341)
[»] scaffold0229 (1 HSPs)
scaffold0229 (19-187)||(13009-13177)
[»] scaffold0519 (1 HSPs)
scaffold0519 (20-137)||(11196-11311)
[»] scaffold0263 (1 HSPs)
scaffold0263 (20-121)||(23168-23263)
[»] scaffold0464 (1 HSPs)
scaffold0464 (20-81)||(6425-6486)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 38010790 - 38010617
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38010790 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 38010691  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38010690 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 38010617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 29989957 - 29990130
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgata 29990056  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  29990057 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 29990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 13478221 - 13478054
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  13478221 ggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgata 13478122  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtaca 181  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  13478121 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtaca 13478054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 13015382 - 13015538
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13015382 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatatatatt 13015481  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatg 176  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13015482 ttttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacataatg 13015538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 13086748 - 13086910
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||    
T  13086748 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgata 13086847  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatg 176  Q
    | | ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  13086848 tgtattttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatg 13086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 13421186 - 13421013
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||  || ||| |||||||||||||||||| |||||||| |||    
T  13421186 ggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaata 13421087  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||    
T  13421086 tatgttttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtg 13421013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 10292893 - 10293039
Alignment:
Q  39 taccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccaca 138  Q
    ||||||||||||||||||||| ||||||| | |||||||| ||| ||||||| ||| ||| |  |||||||||||| |  ||||||||| |||||||||     
T  10292893 taccaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattt--tttttaaagggtgtgccacg 10292990  T
Q  139 tggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  10292991 tggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 33858709 - 33858542
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgt 118  Q
    |||| ||||||||||||||||||||||  |||||| ||||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||  |    
T  33858709 tcacctgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ct 33858611  T
Q  119 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  33858610 tttttaaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtg 33858542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 11607704 - 11607538
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||||| |||||||||||||  |||||||||||||  ||    
T  11607704 cacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatata-ctt 11607606  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| |||||||||  | ||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  11607605 ttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtg 11607538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 1826260 - 1826428
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||| ||||||||| |||||| |||||  |||| | |||||| ||| ||||||| ||||||| || || ||||||||||||||| ||    
T  1826260 cacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatat-tt 1826358  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtgat 189  Q
    ||||||||| ||||||||||||||||  |||||||   |||| |||||| ||| ||| |||| |||||||    
T  1826359 ttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgat 1826428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 19357431 - 19357266
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||||||||| |||||||||| |||||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| ||||||||||||||  ||    
T  19357431 cacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata--tt 19357334  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||  ||| |||| || ||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  19357333 ttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtg 19357266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 37881185 - 37881268
Alignment:
Q  63 aataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacac 146  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac 37881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 9827789 - 9827894
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| | ||   |||| | ||||| |||| ||||||| |||||||||||||| |||||||||||||| ||    
T  9827789 cacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatatatctt 9827888  T
Q  120 ttttaa 125  Q
    ||||||    
T  9827889 ttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 39570213 - 39570097
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||| |||||| ||| ||||| |||||| ||||| ||||| | |||||| ||| |||||||||||||||||||||  |||||||||||||  ||    
T  39570213 cacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatata-ctt 39570115  T
Q  120 ttttaaagtgtgtgccac 137  Q
    |||||||| |||||||||    
T  39570114 ttttaaagggtgtgccac 39570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 33271630 - 33271781
Alignment:
Q  35 aaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgc 134  Q
    |||||||||||| |||||| ||||| ||||| | |||||| ||  || ||||||||||| |||||| ||||||||||||||| ||||||||||  || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaaggatgcgc 33271728  T
Q  135 cacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||| |||||||   |||||||  |||  |||||| ||| |||||||| |||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtg 33271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 35622811 - 35622878
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||  |||| |||||||||||||||    
T  35622811 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 35622878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 35622990 - 35622939
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaat 65  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||||||||    
T  35622990 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 35622939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 42148201 - 42148263
Alignment:
Q  74 gccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 137  Q
    ||||| |||||||||||||||||||||  |||||||||||||| |||||||||| |||| ||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 42331111 - 42331073
Alignment:
Q  149 taattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtg 42331073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 38832962 - 38832920
Alignment:
Q  39 taccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    |||||||||||||||||||||  |||| |||||||||||||||    
T  38832962 taccaatgttatataacattggtcaatgaaagtgtgccacata 38832920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 47186170 - 47186343
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgata 47186269  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47186270 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 47186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 31187247 - 31187073
Alignment:
Q  13 tggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgat 112  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  31187247 tggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgat 31187148  T
Q  113 atatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  31187147 atatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 31187073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 42664667 - 42664841
Alignment:
Q  13 tggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgat 112  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||    
T  42664667 tggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgat 42664766  T
Q  113 atatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  42664767 atatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 42664841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 34029466 - 34029294
Alignment:
Q  15 gacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatat 114  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||  ||||||||||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatat 34029367  T
Q  115 atgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  34029366 atgttttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtg 34029294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 50934500 - 50934613
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgt 118  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| | |||||||||| ||||||||||||||||||||| | ||||||||||||| |    
T  50934500 tcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatatattt 50934599  T
Q  119 tttttaaagtgtgt 132  Q
    | ||||||| ||||    
T  50934600 tatttaaagggtgt 50934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 44380255 - 44380421
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||| | |||||| ||| || |||| ||||||||||||| ||||||||||||||  ||    
T  44380255 cacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatata-ctt 44380353  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  44380354 ttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 47426351 - 47426471
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||  |||||| ||||| ||||| | |||||| ||| || ||||||||||||||| || ||||||||||||||| ||    
T  47426351 cacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatat-tt 47426449  T
Q  120 ttttaaagtgtgtgccacatgg 141  Q
    |||||||| |||||||||||||    
T  47426450 ttttaaagggtgtgccacatgg 47426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 33509679 - 33509805
Alignment:
Q  18 atcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatg 117  Q
    |||| ||||||||||||||||||| |||  |||||| ||||||||||| | |||||||||| ||||||| |||||||||| || ||||||||||| |||     
T  33509679 atcatttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtat- 33509777  T
Q  118 ttttttaaagtgtgtgccacatggcaca 145  Q
    ||||||||||  ||||||||||||||||    
T  33509778 ttttttaaaggatgtgccacatggcaca 33509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 37742738 - 37742892
Alignment:
Q  32 attaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtg 131  Q
    ||||||||||||||| |||||| |||||  |||| | ||| |||||| |||||||||||| |||  ||| ||||||||||||||| |||||||||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat-ttttttaaagagtg 37742836  T
Q  132 tgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||| |||||||   |||||||  |||| |||||| ||| ||| |||| |||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtg 37742892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 21963134 - 21963073
Alignment:
Q  11 gatggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtg 72  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  21963134 gatggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 6022998 - 6023115
Alignment:
Q  71 tgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgc-------cacatggcacaccttaattggctaatgtt 163  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||| |||||||||| ||||||       ||| |||||||||||||||||| ||| ||    
T  6022998 tgtgccacatactaatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccacgtggcacgtggcacaccttaattggccaatatt 6023097  T
Q  164 atataacataatggtaca 181  Q
    |||||| || ||||||||    
T  6023098 atataatattatggtaca 6023115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 10018736 - 10018671
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaa 85  Q
    ||||||||||||||||| |||||||||||||||| |||||  ||||||||||||||||| ||||||    
T  10018736 cacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 35094554 - 35094655
Alignment:
Q  27 gtaccattaaggtaccaatgttatataacattgaccaataaaagtgt--gccacataccaatgttactttataaatactttatttgatatatgtttttta 124  Q
    |||||||||| |||||| || |||||| ||||||| ||| | || ||  ||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatat-tttttta 35094652  T
Q  125 aag 127  Q
    |||    
T  35094653 aag 35094655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 53440541 - 53440608
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||| |||||||||||||||  | |||||||||||||||||| |||||||| |||||||||||||||    
T  53440541 ggacaccacttgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacata 53440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 42273329 - 42273396
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||  |||| |||||||||||||||    
T  42273329 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 42273396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 46489831 - 46489764
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||  |||| |||||||||||||||    
T  46489831 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 46489764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  21 acttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatg 87  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||| | |||||||||| ||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 39498838 - 39498744
Alignment:
Q  21 acttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatata 115  Q
    |||||||||||||||| ||||||||| ||||||  ||||  |||| |||||||| ||| || | |||||| |||||||||| ||||||| |||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 10123276 - 10123211
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaa 85  Q
    ||||||||||||||||| ||| |||||||||||| || ||  ||||||||||||||||| ||||||    
T  10123276 cacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 43689404 - 43689453
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaa 69  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||||    
T  43689404 cacttgtgtaccattgtgataccaatgttatataacattgaccaataaaa 43689453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 46489652 - 46489703
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaat 65  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||||||||    
T  46489652 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 46489703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 10179933 - 10179868
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaa 85  Q
    ||||||||||||||||| ||||||||| |||||| |||||  |||| | |||||||||| ||||||    
T  10179933 cacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 34955067 - 34955128
Alignment:
Q  13 tggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtg 74  Q
    |||||| |||||||||||||||  | ||||||||||||||||||||| ||||| || |||||    
T  34955067 tggacaccacttgtgtaccattgggataccaatgttatataacattggccaatgaaggtgtg 34955128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 17466296 - 17466390
Alignment:
Q  42 caatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 137  Q
    ||||| |||||| |||||  |||| | |||||| ||| || ||||||||||||||||||  |||| ||||||||| |||||||||| || ||||||    
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac 17466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 53440712 - 53440669
Alignment:
Q  22 cttgtgtaccattaaggtaccaatgttatataacattgaccaat 65  Q
    |||||||||||||| | |||||||||||||||||||||| ||||    
T  53440712 cttgtgtaccattaggataccaatgttatataacattgatcaat 53440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 6053778 - 6053733
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattg 59  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||    
T  6053778 ggacaccacttgtgtaccattgggataccaatgttatataacattg 6053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 25859019 - 25859067
Alignment:
Q  124 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacat 172  Q
    |||| |||||||||||| |||||  |||||||| |||||||||||||||    
T  25859019 aaagggtgtgccacatgacacactctaattggccaatgttatataacat 25859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 52012773 - 52012946
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgata 52012872  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  52012873 tatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 52012946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 9799533 - 9799366
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  9799533 cacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgtt 9799434  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  9799433 ttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 9799366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 47943152 - 47943302
Alignment:
Q  13 tggacatcacttgtgtaccattaaggtaccaatgttatataacatt-gaccaataaaagtgtgccacataccaatgttactttataaatactttatttga 111  Q
    |||||| |||||||||||||||||  |||||||||||||||| ||| ||||||||||| |||||||||||||||| ||| |||||||||| |||||||||    
T  47943152 tggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttga 47943251  T
Q  112 tatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgt 162  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  47943252 tatatgttttttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 21260803 - 21260951
Alignment:
Q  28 taccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 127  Q
    ||||||||||||||||||| |||||| ||||| ||||| | |||||| ||| |||||||||||||||||||||  |||||||||||||| ||||||||||    
T  21260803 taccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-ttttttaaag 21260901  T
Q  128 tgtgtgccacatggcacaccttaattggctaatgttatataacataatgg 177  Q
     |||||||||||||||||   ||||||| |||||||||||| ||| ||||    
T  21260902 ggtgtgccacatggcacattctaattgggtaatgttatataccattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 12473705 - 12473871
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||||| | |||||||||| |||||||||||||||||| || ||||||||||||||| ||    
T  12473705 cacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-tt 12473803  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| |||||||| |||||    
T  12473804 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtg 12473871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 12528114 - 12528280
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||||| | |||||||||| |||||||||||||||||| || ||||||||||||||| ||    
T  12528114 cacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatat-tt 12528212  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| ||||| |||||| ||||   ||||||   |||| |||||| ||| |||||||| |||||    
T  12528213 ttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtg 12528280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 33249545 - 33249420
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgt 118  Q
    ||||||||||||||||||||||| |||| ||||||  |||| ||||| | |||||| ||| ||||||||||||||||||||| |||||||||||||||      
T  33249545 tcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatat-a 33249447  T
Q  119 tttttaaagtgtgtgccacatggcaca 145  Q
    ||||||||| |||||||||||||||||    
T  33249446 tttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 35869741 - 35869625
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||| | | |||||||| ||||||||||||| |||||||  |||||||||||||  ||    
T  35869741 cacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata-ctt 35869643  T
Q  120 ttttaaagtgtgtgccac 137  Q
    |||||||| |||||||||    
T  35869642 ttttaaagggtgtgccac 35869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 46719953 - 46720023
Alignment:
Q  42 caatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgat 112  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  46719953 caatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 22343338 - 22343462
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||||| | |||||| ||  || |||||||||||||||||| ||||||||||||||| |     
T  22343338 cacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatat-ta 22343436  T
Q  120 ttttaaagtgtgtgccacatggcaca 145  Q
    ||||||||  ||||||||||| ||||    
T  22343437 ttttaaaggatgtgccacatgacaca 22343462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 46720200 - 46720276
Alignment:
Q  104 ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggta 179  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggta 46720276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 51811915 - 51812030
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||| |||||||||||||||| ||| | ||||||  |||| ||||| | ||| |||||| |||||||||||||||||||||  ||| |||||||||| ||    
T  51811915 cactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatat-tt 51812013  T
Q  120 ttttaaagtgtgtgcca 136  Q
    |||||||| ||||||||    
T  51812014 ttttaaagggtgtgcca 51812030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 55590483 - 55590559
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttat 96  Q
    ||||||||||||||||||||||||||| |||||| |||||| |||| | |||||| ||| |||||||||||||||||    
T  55590483 cacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 34829254 - 34829168
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatacttt 105  Q
    |||||| ||||| ||||||||||||||| |||||| || || ||||| |||||||| ||| ||||||||||||||||||||| ||||    
T  34829254 tcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 49999758 - 49999662
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatat 116  Q
    |||||||||||||| ||| ||| |||||||| |  |||||  |||| | |||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 54277700 - 54277631
Alignment:
Q  12 atggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||||| |||||||||||||||  | |||||||||||||||||||||  |||| |||||||||||||||    
T  54277700 atggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 54277631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 28092919 - 28092852
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||  |||| |||||||||||||||    
T  28092919 ggacaccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacata 28092852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 28092740 - 28092791
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaat 65  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||||||||    
T  28092740 ggacaccacttgtgtaccattgggataccaatgttatataacattgaccaat 28092791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  23 ttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccac 78  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||| |  |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 36634575 - 36634529
Alignment:
Q  13 tggacatcacttgtgtaccattaaggtaccaatgttatataacattg 59  Q
    |||||| |||||||||||||||  | |||||||||||||||||||||    
T  36634575 tggacaccacttgtgtaccattgggataccaatgttatataacattg 36634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 41876452 - 41876402
Alignment:
Q  39 taccaatgttatataacattgaccaataaaagtgtgccacat-accaatgt 88  Q
    ||||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  41876452 taccaatgttatataacattgaccaattaaggtgtgtcacatgaccaatgt 41876402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 36821713 - 36821754
Alignment:
Q  39 taccaatgttatataacattgaccaataaaagtgtgccacat 80  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  36821713 taccaatgttatataacattggccaatgaaggtgtgccacat 36821754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 33174581 - 33174636
Alignment:
Q  85 atgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggca 143  Q
    ||||||||||||||||  |||||||||||||   ||||||||| ||||||||| |||||    
T  33174581 atgttactttataaatgttttatttgatata---tttttaaagggtgtgccacgtggca 33174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 34245562 - 34245735
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34245562 ggacaccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgata 34245661  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  34245662 tatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataatataatggtacacaagtg 34245735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 11113557 - 11113718
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| ||||||||||| ||| | |||||||||||     ||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat-----tt 11113651  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagt 186  Q
    ||||||||  || |||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||    
T  11113652 ttttaaaggatgcgccacatggcacaccttaattgaccaatgttatataccattatggtacataagt 11113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 1212015 - 1211846
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgt 118  Q
    |||||||||||||||||||||||||||| |||||| ||||| | ||| |  ||||||||| |  ||||||||||||||  || ||||||||||||||| |    
T  1212015 tcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-t 1211917  T
Q  119 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtgat 189  Q
    ||||||||| ||||||||| |||||||   |||| ||  |||| |||||| ||| |||||||| |||||||    
T  1211916 tttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgat 1211846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 5404046 - 5403880
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||||||||||||||| |||| ||||||  ||||  || | | ||| |||||| |||||||||||||||||| ||  |||||||||||||| ||    
T  5404046 cacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatat-tt 5403948  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| | ||  |||||| ||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  5403947 ttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtg 5403880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 32645002 - 32644888
Alignment:
Q  24 tgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 123  Q
    |||||||||||||| || | ||  |||||| ||||| ||||| || ||||| ||| ||| |||||||||||| |||||||||||||| ||||| ||||||    
T  32645002 tgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgttatat-tttttt 32644905  T
Q  124 aaagtgtgtgccacatg 140  Q
    |||| ||||||||||||    
T  32644904 aaagggtgtgccacatg 32644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 12800423 - 12800356
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||| |||||||||||||||  | ||||||||||||||||||||| | ||| || ||||||||||||    
T  12800423 ggacaccacttgtgtaccattgggataccaatgttatataacattggctaatgaaggtgtgccacata 12800356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 11753168 - 11753232
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacatacca 84  Q
    ||||||||||||||||||||||||||| |||||| ||| | ||||| | ||||| |||| |||||    
T  11753168 cacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 7234529 - 7234489
Alignment:
Q  21 acttgtgtaccattaaggtaccaatgttatataacattgac 61  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  7234529 acttgtgtatcattaaggtaccaacgttatatatcattgac 7234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 10126546 - 10126602
Alignment:
Q  118 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataa 174  Q
    ||||| |||| ||||||||| ||||||||| | |||||  |||||||||||||||||    
T  10126546 tttttaaaagggtgtgccacgtggcacacccttattggacaatgttatataacataa 10126602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 17330555 - 17330519
Alignment:
Q  151 attggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||||| |||||||||||||||||||| |||||    
T  17330555 attggctaatattatataacataatggtacacaagtg 17330519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 8809816 - 8809643
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  |||||||||||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgata 8809717  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  8809716 tatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 8809643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 35998253 - 35998414
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||| ||||||| |  ||||||| |||||||||    
T  35998253 cacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgtt 35998352  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtaca 181  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35998353 ttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtaca 35998414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 29119494 - 29119370
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| | |||||||||| || || |||||||||||| || ||||||||||||||| ||    
T  29119494 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatat-tt 29119396  T
Q  120 ttttaaagtgtgtgccacatggcaca 145  Q
    |||||||| |||||||||||||||||    
T  29119395 ttttaaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 32676137 - 32676261
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| | | ||  |||| ||||||||||||||||||||| ||||||||||||||| ||    
T  32676137 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatat-tt 32676235  T
Q  120 ttttaaagtgtgtgccacatggcaca 145  Q
    ||||||||  ||||||||||||||||    
T  32676236 ttttaaagcatgtgccacatggcaca 32676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 35534413 - 35534561
Alignment:
Q  26 tgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 125  Q
    |||| ||||||| |||||||||||||||||||||  || | | |||||||||||||| ||||| | ||||||| |  ||||||| ||||    |||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttatttaatat----tttttaa 35534508  T
Q  126 agtgtgtgccacatggcacaccttaattggctaatgttatataacataatggt 178  Q
    || |||||||||||| ||||||||||||||| ||| ||||||||||| |||||    
T  35534509 agggtgtgccacatgacacaccttaattggccaatattatataacattatggt 35534561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 2569038 - 2569161
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||| ||||||||||||||  ||    
T  2569038 cacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata--tt 2569135  T
Q  120 ttttaaagtgtgtgccacatggcaca 145  Q
    |||||||| ||||||||  |||||||    
T  2569136 ttttaaagggtgtgccatgtggcaca 2569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 6223052 - 6223148
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatat 116  Q
    ||||||||||||||||| ||| |||||||||||| |||||| |||| || ||||| || ||| |||||||| ||||||| || ||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 25161310 - 25161402
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgat 112  Q
    ||||||||||||||||| ||  ||||| |||||| ||||||||||| | |||||||||| || ||||||||||||||||||  ||||||||||    
T  25161310 cacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 18056199 - 18056134
Alignment:
Q  15 gacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacat 80  Q
    |||| |||||||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||    
T  18056199 gacaccacttgtgtaccattaaactaccaatgttatataatattgaccaatgaaagtgtgccacat 18056134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 8462141 - 8462276
Alignment:
Q  32 attaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtg 131  Q
    ||||| ||||||||| |||||| |||||| |||| | |||||||||| ||||||||||| |||||||||  ||||||| |||||  |||||||||| | |    
T  8462141 attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcg 8462239  T
Q  132 tgccacatggcacaccttaattggctaatgttatata 168  Q
    |||||| || ||||  ||||||||  |||| ||||||    
T  8462240 tgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 5581281 - 5581338
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgcca 77  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||| || ||||||||    
T  5581281 cacttgtgtaccattaggatactaatgttatataacattgaccaatgaaggtgtgcca 5581338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatata 53  Q
    ||||||||||||||||||||||||||||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 31953826 - 31953867
Alignment:
Q  39 taccaatgttatataacattgaccaataaaagtgtgccacat 80  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  31953826 taccaatgttatataacattgaccaatgaaggtgtgccacat 31953867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  48 tatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttga 111  Q
    |||||| ||||||||||| | ||||| | || |||||||||||||||||||||  |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 16679744 - 16679829
Alignment:
Q  71 tgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggc 156  Q
    ||||||| |||| ||| ||  ||||||| | ||||||||||||||| |||||||||| ||||| ||| || |||| | ||||||||    
T  16679744 tgtgccatatacaaatattcttttataagtgctttatttgatatatattttttaaagggtgtgtcacgtgacacatcctaattggc 16679829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 17431709 - 17431754
Alignment:
Q  129 gtgtgccacatggcacaccttaattggctaatgttatataacataa 174  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||    
T  17431709 gtgtgccacatggcacaccctgattggacaatgttatataacataa 17431754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 46435623 - 46435590
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatata 53  Q
    ||||||||||||||||||||||||||| ||||||    
T  46435623 cacttgtgtaccattaaggtaccaatggtatata 46435590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 8555470 - 8555522
Alignment:
Q  60 accaataaaagtgtgccacataccaatgttactttataaatactttatttgat 112  Q
    |||||| ||| |||| ||||||||||||||| |||||||||  ||||||||||    
T  8555470 accaattaaaatgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 18056027 - 18056087
Alignment:
Q  21 acttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    |||||||||||| |  | || |||||||||||||||||||||||| || ||||| ||||||    
T  18056027 acttgtgtaccactgggatatcaatgttatataacattgaccaatgaaggtgtgtcacata 18056087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 1514798 - 1514951
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgata 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||  |||||||||||    
T  1514798 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgata 1514897  T
Q  114 tatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatat 167  Q
    ||| ||||||||| ||||| ||| ||| |||||||||||||| |||||||||||    
T  1514898 tatattttttaaaatgtgtaccatatgtcacaccttaattggttaatgttatat 1514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 41179733 - 41179567
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||| ||| |||| ||||||||||||||||  ||||||| |||||| ||    
T  41179733 cacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatat-tt 41179635  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||| |  ||||||||||||||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  41179634 ttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 18168392 - 18168503
Alignment:
Q  26 tgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 125  Q
    ||||||||||||||||||||| |||||| |||||| |||| | ||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  126 agtgtgtgccac 137  Q
    ||  ||||||||    
T  18168492 aggatgtgccac 18168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 18631949 - 18632060
Alignment:
Q  26 tgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaa 125  Q
    ||||||||||||||||||||| |||||| |||||| |||| | ||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  126 agtgtgtgccac 137  Q
    ||  ||||||||    
T  18632049 aggatgtgccac 18632060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 24338000 - 24337834
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||| ||||||||| ||||| |||||| ||| |  |||| | |||||||||  |||||||||||||||||| || |||||||||||||||  |    
T  24338000 cacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatat-at 24337902  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| ||||||||||| |||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  24337901 ttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtg 24337834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 4708470 - 4708353
Alignment:
Q  27 gtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaa 126  Q
    |||||| |||||||||||||  ||||| |||   ||||| |||||||| ||| |||||||||||||||||||||  ||||||||||||||  ||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaa 4708372  T
Q  127 gtgtgtgccacatggcaca 145  Q
    | ||||||||| |||||||    
T  4708371 gggtgtgccacgtggcaca 4708353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 32826006 - 32825854
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgt 118  Q
    |||||||||||||||||| ||| ||||||| |||| ||||| ||||| | ||| || |||||| |||||||| ||||||  |  |||||||||||||| |    
T  32826006 tcacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatat-t 32825908  T
Q  119 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacat 172  Q
    |||| ||||  |||| |||||| |||| |||||||||| |||  ||||||||||    
T  32825907 ttttaaaaggttgtgtcacatgacacatcttaattggccaattatatataacat 32825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 11254197 - 11254082
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||||||||||  |||||||| |||||| ||||||||| || | || | |||| |||||||||||||||||||||  |||||||||||||   |    
T  11254197 cacttgtgtaccattaaattaccaatgatatatatcattgaccattata-gtataccacctaccaatgttactttataaatgttttatttgatata-cat 11254100  T
Q  120 ttttaaagtgtgtgccac 137  Q
    |||||||| |||||||||    
T  11254099 ttttaaagggtgtgccac 11254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 40530585 - 40530522
Alignment:
Q  14 ggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgcca 77  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||| ||| || ||||||||    
T  40530585 ggacaccacttgtgtaacattgagataccaatgttatataacattgactaatgaaggtgtgcca 40530522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 10163501 - 10163641
Alignment:
Q  38 gtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 137  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  10163501 gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctac 10163600  T
Q  138 atggcacaccttaattggctaatgttatataacataatggt 178  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  10163601 atggcataccttaattgactaatgttatataacataatggt 10163641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 34392251 - 34392085
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||| ||||||||||| |||||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| ||||||||||||||| ||    
T  34392251 cacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatat-tt 34392153  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| |||||||||||||||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  34392152 ttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtg 34392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 3668112 - 3668013
Alignment:
Q  88 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtg 3668013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 7381695 - 7381794
Alignment:
Q  22 cttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtttt 121  Q
    ||||||||||||||||||||||||| ||||||  |||| ||||| | |||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatatatttttt 7381794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 21603960 - 21604055
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatata 115  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||| | |||||  ||| |||||||||||||||||||||  |||||||||||||    
T  21603960 cacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 23863958 - 23863813
Alignment:
Q  33 ttaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgt 132  Q
    |||||||||||||| ||||| |  |||  |||| | |||||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||| ||||    
T  23863958 ttaaggtaccaatggtatatta--ttggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgt 23863862  T
Q  133 gccacatggcacaccttaattggctaatgttatataacataatggtaca 181  Q
    |||||||||||||   |||||||  |||| |||||| ||| ||||||||    
T  23863861 gccacatggcacattctaattggacaatgatatatatcattatggtaca 23863813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 14566019 - 14565908
Alignment:
Q  24 tgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 123  Q
    ||||||||| |||||||||||||||||||| |||||| |||  | ||||||| |||||||||| ||| ||||||| ||||| |||||||||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatata-gtttttt 14565921  T
Q  124 aaagtgtgtgcca 136  Q
    ||||  |||||||    
T  14565920 aaaggatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 37358091 - 37357988
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||| | |||||| ||| || |||||||||||||||||| |||||||| |||| | ||    
T  37358091 cacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatatttttt 37357992  T
Q  120 tttt 123  Q
    ||||    
T  37357991 tttt 37357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 41095901 - 41095797
Alignment:
Q  75 ccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataa 174  Q
    |||| ||||||||||||||||||||| |||||||||||| || |||||||||  || |||||||||||||||| ||| |||| |||| |||||| ||| |    
T  41095901 ccacctaccaatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacaccctaaatggccaatggtatataccatta 41095803  T
Q  175 tggtac 180  Q
    ||||||    
T  41095802 tggtac 41095797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 37811084 - 37811153
Alignment:
Q  12 atggacatcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    ||||||| |||||||||||||||  | ||||||||||||||||||||| ||||| |||||||||||||||    
T  37811084 atggacaccacttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacata 37811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 4779614 - 4779692
Alignment:
Q  48 tatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaag 127  Q
    |||||| |||||| || | | |||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||    
T  4779614 tatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatat-ttttttaaag 4779692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 4775635 - 4775796
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatacttt-atttgatatatgt 118  Q
    ||||| |||||||||||| |||||||| ||||||  |||| ||||| | | |||  ||  ||||||| ||||||||| |||  ||| |||| |||||| |    
T  4775635 cacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatat-t 4775733  T
Q  119 tttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtaca 181  Q
    |||||||||  ||||||||||||||||  ||||||||  |||| |||||| ||| ||||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtaca 4775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 3668390 - 3668346
Alignment:
Q  16 acatcacttgtgtaccattaaggtaccaatgttatataacattga 60  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||    
T  3668390 acatcatttgtgtatcattaaggtaccaatgttatataacattga 3668346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 25275741 - 25275676
Alignment:
Q  70 gtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 137  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||    
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatata-cttttttaaaggatgtgccac 25275676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 37811257 - 37811198
Alignment:
Q  22 cttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    |||||||||||||  | |||||||||||||||||||||| |||| || | ||||||||||    
T  37811257 cttgtgtaccattgggataccaatgttatataacattgatcaatgaaggcgtgccacata 37811198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 43154176 - 43154124
Alignment:
Q  118 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataac 170  Q
    |||||||||| ||||||||| ||||||||| | |||||  |||||||||||||    
T  43154176 ttttttaaagggtgtgccacgtggcacaccctgattggacaatgttatataac 43154124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 43159344 - 43159396
Alignment:
Q  118 ttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataac 170  Q
    |||||||||| ||||||||| ||||||||| | |||||  |||||||||||||    
T  43159344 ttttttaaagggtgtgccacgtggcacaccctgattggacaatgttatataac 43159396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 35341537 - 35341695
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||  ||    
T  35341537 cacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata-ctt 35341635  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggta 179  Q
    |||||||| ||||||||| || ||||   |||||||  |||| |||||| ||| ||||||    
T  35341636 ttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggta 35341695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 48250155 - 48250274
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| |||||| |||||  |||| | |||||||||| |||||||||||||||||| || ||||||||||||| | ||    
T  48250155 cacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat-tttt 48250253  T
Q  120 ttttaaagtgtgtgccacatg 140  Q
    |||||||| || ||| |||||    
T  48250254 ttttaaagggtatgctacatg 48250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 48072390 - 48072554
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||| ||||||||||||||  ||||   |||||| |||| | ||||||||||||  |||||||| |||||||||| |||||||||| ||| ||    
T  48072390 cacttgtgtactattaaggtaccaatagtatac--cattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtat-tt 48072486  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    |||||||| ||||||||| |||||||   |||||||  |||| |||||| ||| |||||||| |||||    
T  48072487 ttttaaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtg 48072554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  23 ttgtgtaccattaaggtaccaatgttatataacattgaccaata-aaagtgtgccacataccaatgttactttataaatactttatttgat 112  Q
    |||||||||||||| ||| ||||| |||||| ||||| |||||  ||||||||| || ||||||||||||||||||||| |||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 32694677 - 32694624
Alignment:
Q  83 caatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 137  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  32694677 caatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccac 32694624  T

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Target: scaffold0032 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 34195 - 34341
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    ||||||||||||||||||||||||||| ||||||  |||| ||||| | |||||||||| ||||||| |||||||||||||| |||||||||||||  ||    
T  34195 cacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata--tt 34292  T
Q  120 ttttaaagtgtgtgccacatggcacaccttaattggctaatgttatata 168  Q
    |||||||| ||||| ||| || ||||   ||||||| ||||||||||||    
T  34293 ttttaaagggtgtgtcacgtgacacattctaattggataatgttatata 34341  T

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Target: scaffold0229 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 13177 - 13009
Alignment:
Q  19 tcacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgt 118  Q
    |||||||||||||||||||||||||||| |||||| ||||| | ||| |  ||||||||| |  ||||||||||||||  || ||||||||||||||| |    
T  13177 tcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-t 13079  T
Q  119 tttttaaagtg-tgtgccacatggcacaccttaattggctaatgttatataacataatggtacaaaagtg 187  Q
    ||||||||| | |||||||| |||||||   |||| ||  |||| |||||| ||| |||||||| |||||    
T  13078 tttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 13009  T

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Target: scaffold0519 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 11196 - 11311
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||||||||||  |||||||| |||||| ||||||||| || | || | |||| |||||||||||||||||||||  |||||||||||||   |    
T  11196 cacttgtgtaccattaaattaccaatgatatatatcattgaccattata-gtataccacctaccaatgttactttataaatgttttatttgatata-cat 11293  T
Q  120 ttttaaagtgtgtgccac 137  Q
    |||||||| |||||||||    
T  11294 ttttaaagggtgtgccac 11311  T

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Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 23263 - 23168
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatactttatttgatatatgtt 119  Q
    |||||||||||||||||||||| |      |||| ||||| ||||| | |||||||||| ||||||| |||||||||||||| |||||||||||||| ||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttt 23170  T

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Target: scaffold0464 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 6425 - 6486
Alignment:
Q  20 cacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacata 81  Q
    |||||||||||||||  | || |||||||||||||||||| |||||||| ||||||||||||    
T  6425 cacttgtgtaccattgggatatcaatgttatataacattggccaataaaggtgtgccacata 6486  T

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