View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7247_low_1 (Length: 868)

Name: NF7247_low_1
Description: NF7247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7247_low_1
NF7247_low_1
[»] chr4 (12 HSPs)
chr4 (1-363)||(54789931-54790293)
chr4 (1-363)||(54778852-54779216)
chr4 (1-363)||(52282585-52282955)
chr4 (422-687)||(18923082-18923348)
chr4 (758-850)||(54789817-54789909)
chr4 (747-849)||(52282448-52282550)
chr4 (726-850)||(54779222-54779342)
chr4 (594-720)||(44475152-44475278)
chr4 (667-720)||(2178974-2179026)
chr4 (667-720)||(6120739-6120792)
chr4 (369-408)||(18923014-18923053)
chr4 (373-443)||(44474923-44474994)
[»] chr5 (8 HSPs)
chr5 (367-720)||(14830094-14830443)
chr5 (422-720)||(28739674-28739979)
chr5 (594-720)||(985116-985242)
chr5 (594-696)||(21175538-21175640)
chr5 (602-684)||(26414461-26414543)
chr5 (364-490)||(26414618-26414745)
chr5 (369-413)||(28740009-28740053)
chr5 (373-443)||(984887-984958)
[»] chr8 (6 HSPs)
chr8 (186-363)||(19295972-19296149)
chr8 (368-720)||(37952677-37953037)
chr8 (758-850)||(19295858-19295950)
chr8 (602-720)||(10890590-10890708)
chr8 (619-720)||(5572546-5572647)
chr8 (631-705)||(5643251-5643325)
[»] chr1 (7 HSPs)
chr1 (369-720)||(48975727-48976095)
chr1 (602-716)||(43535568-43535682)
chr1 (594-695)||(32241064-32241165)
chr1 (368-415)||(23999129-23999176)
chr1 (373-443)||(32240741-32240812)
chr1 (373-480)||(43535799-43535906)
chr1 (573-720)||(52456005-52456151)
[»] chr7 (3 HSPs)
chr7 (395-720)||(21976213-21976546)
chr7 (594-693)||(43428017-43428116)
chr7 (368-413)||(7560013-7560058)
[»] chr6 (4 HSPs)
chr6 (465-720)||(23059185-23059438)
chr6 (388-720)||(6956138-6956475)
chr6 (369-414)||(23059439-23059484)
chr6 (745-778)||(11602812-11602845)
[»] chr2 (8 HSPs)
chr2 (569-720)||(42926559-42926710)
chr2 (394-523)||(42926401-42926532)
chr2 (569-723)||(12209939-12210091)
chr2 (370-541)||(35608482-35608647)
chr2 (369-480)||(12209779-12209890)
chr2 (579-720)||(9197241-9197382)
chr2 (569-696)||(35608316-35608444)
chr2 (667-720)||(32553689-32553742)
[»] chr3 (5 HSPs)
chr3 (603-714)||(9702095-9702206)
chr3 (594-720)||(49137929-49138055)
chr3 (482-537)||(9701966-9702021)
chr3 (314-350)||(21768622-21768658)
chr3 (373-443)||(49138213-49138284)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 54790293 - 54789931
Alignment:
Q  1 atatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttagaaatacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54790293 atatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttacaaatacaaa 54790194  T
Q  101 ttcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcgca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54790193 ttcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaatgacatgcactctcgca 54790094  T
Q  201 aaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgacagacacttgacacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||    
T  54790093 aaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacactaacagacacttgacacaa 54789994  T
Q  301 catagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54789993 catagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 54789931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 54778852 - 54779216
Alignment:
Q  1 atatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttagaaatacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54778852 atatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagtttacaaatacaaa 54778951  T
Q  101 ttcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctcgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54778952 ttcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcactctccca 54779051  T
Q  201 aaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgaca--gacacttgacac 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||  |||     
T  54779052 aaagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtaattgaaagaaagctatgaaacactgacactgacactgcacat 54779151  T
Q  299 aacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 363  Q
     |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||| ||||||    
T  54779152 gacatagacacatcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttag 54779216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 52282955 - 52282585
Alignment:
Q  1 atatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaact-----gcataagtgcataacatgcattgtgcacagtttagaaat 95  Q
    ||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||     ||||||||||||||||||||||||||||| | || ||||    
T  52282955 atatacatgatgcaattaggaaaaagaataagatatcccccagagcaaaacaaactaaactgcataagtgcataacatgcattgtgcacaatatacaaat 52282856  T
Q  96 acaaattcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataacatgcact- 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||| |||||||||||||||||||||||| |||||||||||     
T  52282855 acaaattcagaacatataaggaaaactacagccatgcatgaagcagagatacatc---gtgcgctacttattaaaaatatagattcagtaacatgcactc 52282759  T
Q  195 --ctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgac--agaca 290  Q
      ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||  | |||    
T  52282758 tcctcccaaaagaaaaaccacacacaactaaataactaaaaattgttaaaatacagtctgcttctaattgaaagaaagctatgaaacactgacataaaca 52282659  T
Q  291 cttgacacaacatagacacataat-gagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 363  Q
    || ||||| |||||||||| | || ||||  | |||||||||| || ||| ||||||||||| | |||||||||    
T  52282658 ctggacacgacatagacacgtcatggagagaacgaattatttgtacataatcacatgtgtcagtttcgtgttag 52282585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 422 - 687
Target Start/End: Original strand, 18923082 - 18923348
Alignment:
Q  422 tatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttcc 521  Q
    ||||||| |||||||||||||| |||||||||||||| | |||||||| |  ||||||| |||| |||| ||||| |||||| || |||||| |||| ||    
T  18923082 tatatatattagattaggcatacttgtatcacaactatgtagttggcgtaatggaaatgatgttagtttttcttgtgtaggttgctggttcgaccctccc 18923181  T
Q  522 atcctctttctgttatatttttactattttgttnnnnnnnnnnnngc-ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataa 620  Q
    ||||||||||| |||||||||||||||||| ||               |||||||  ||| |||||| ||||||||| || |||||||||||||| ||||    
T  18923182 atcctctttcttttatatttttactatttttttttgtttaaagaaaaactcctatgtggaatcgaaccggcatcccctactctgcaatcaagcaaaataa 18923281  T
Q  621 accactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattct 687  Q
    ||||||||||||||||||| ||||||||||||| |||| ||| || |||||||||||||||||||||    
T  18923282 accactggaccagttaacatttatgatatttctctcacacagtttaatatatatttcatacaattct 18923348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 758 - 850
Target Start/End: Complemental strand, 54789909 - 54789817
Alignment:
Q  758 atcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 850  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54789909 atcagaggtgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 54789817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 747 - 849
Target Start/End: Complemental strand, 52282550 - 52282448
Alignment:
Q  747 acacgcctttgatcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaataaaagaccttataatacccta 846  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52282550 acacgcctttgatcagaggtgttggtgccacagagtaagaaagactggttgaaactaggaaaaataataatatacaaataaaagaccttataatacccta 52282451  T
Q  847 gtt 849  Q
    |||    
T  52282450 gtt 52282448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 726 - 850
Target Start/End: Original strand, 54779222 - 54779342
Alignment:
Q  726 gacaccgaccgaca-gtgtgggacacgcctttgatcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaa 824  Q
    |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| || ||||   ||||||||    
T  54779222 gacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--gtgccacaaagaaagaaagactggttgaaactaggaaacataa---tatacaaa 54779316  T
Q  825 taaaagaccttataataccctagttc 850  Q
    |||||||||||||||||| |||||||    
T  54779317 taaaagaccttataatactctagttc 54779342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 594 - 720
Target Start/End: Original strand, 44475152 - 44475278
Alignment:
Q  594 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 693  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  ||||| ||| || | |||||||||||| ||| ||||||||    
T  44475152 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcacacagtttaaaatatatttcatataatactggcacc 44475251  T
Q  694 ccccataaaatattccaagatccgcca 720  Q
    ||| | ||| | || ||||||||||||    
T  44475252 cccaagaaattttttcaagatccgcca 44475278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 720
Target Start/End: Original strand, 2178974 - 2179026
Alignment:
Q  667 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    ||||||||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  2178974 atatatatttcatacaattctggca-ccccaaaaaaatatttcaagatccgcca 2179026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 720
Target Start/End: Complemental strand, 6120792 - 6120739
Alignment:
Q  667 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    |||||||||||||||||||||| ||||||| | ||||||||  |||||||||||    
T  6120792 atatatatttcatacaattctgacacccccaaaaaaatattttaagatccgcca 6120739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 408
Target Start/End: Original strand, 18923014 - 18923053
Alignment:
Q  369 cagtggcggatcttcatagggaccagcaggtgccatggta 408  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  18923014 cagtggcggaacttcatagggacctgcaggtgccatggta 18923053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 44474923 - 44474994
Alignment:
Q  373 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 443  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  44474923 ggcggatcttccttgggacaggcaggtgccatggtaacccccaagttttctatatatattagattaggcata 44474994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 367 - 720
Target Start/End: Complemental strand, 14830443 - 14830094
Alignment:
Q  367 cccagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttg 466  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||||    
T  14830443 cccagtggcgaatcttcatagggacctgcaggtgccatggtacccccaacttttccacatatattagattaggcataattgtatcacaactatgcagttg 14830344  T
Q  467 gcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttatatttttactattttgttnnnnnnnnnnnn 566  Q
    |||| | ||||||| || |||||| |||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||                
T  14830343 gcgcggtggaaatgatgcttgtttttcttgcataggtcgcgagtttgacccttccatcctctttctgttatatttttactattttgttcaaaaaaaaag- 14830245  T
Q  567 gcctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagcttt 666  Q
      ||| |||  |||| ||||| |||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||     
T  14830244 --ctcgtatgtggatacgaaccggcatctcctactctgcaatcaagcaaaataaaccactggaccagttaacagttatgatatttccttcacacagttta 14830147  T
Q  667 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  14830146 atatatatttcatacaattccggca-cccccataaaatattccaacatccgcca 14830094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 422 - 720
Target Start/End: Complemental strand, 28739979 - 28739674
Alignment:
Q  422 tatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttcc 521  Q
    ||||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||| ||| || ||||||||| | | | |||||||    
T  28739979 tatatatattagattaggcataaatgtatcacaattatgcagttggcgcagcggaaatgatgtttgtttttctcgcataggtcgcgagat-gacccttcc 28739881  T
Q  522 atcctctttct-----------gttatatttttactattttgttnnnnnnnnnnnngcctcctataaggattcgaactggcatccccc-accctgcaatc 609  Q
    |||||||||||           |||||||||||||||||||| |            | ||||||   |||||||||| |||||||||  || || |||||    
T  28739880 atcctctttcttttatatttctgttatatttttactattttgctcaaaaaaa----ggctcctaagtggattcgaaccggcatccccatacactacaatc 28739785  T
Q  610 aagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaaatattcc 709  Q
    |||||| |||||||| ||||||||||||||||||||||||||| | ||| ||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  28739784 aagcaaaataaaccattggaccagttaacagttatgatatttcctccacacagtttaatatatatttcatacaattctggcaccctccataaaatattcc 28739685  T
Q  710 aagatccgcca 720  Q
    |||||||||||    
T  28739684 aagatccgcca 28739674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 594 - 720
Target Start/End: Original strand, 985116 - 985242
Alignment:
Q  594 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 693  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  |||||  || || | |||||||||||||||| ||||||||    
T  985116 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcacatagtttaaaatatatttcatacaatactggcacc 985215  T
Q  694 ccccataaaatattccaagatccgcca 720  Q
    ||| | ||| | || ||||||||||||    
T  985216 cccaagaaattttttcaagatccgcca 985242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 594 - 696
Target Start/End: Complemental strand, 21175640 - 21175538
Alignment:
Q  594 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 693  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||  ||||| ||| || | |||||||||||||||| ||| ||||    
T  21175640 cccccaccctgcaatcaagcaaaataaaccactggacaagttaacaattatgatactttcttcacacagtttaaaatatatttcatacaatactgacacc 21175541  T
Q  694 ccc 696  Q
    |||    
T  21175540 ccc 21175538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 602 - 684
Target Start/End: Complemental strand, 26414543 - 26414461
Alignment:
Q  602 ctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaat 684  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||  ||  || ||||||||||||||||||    
T  26414543 ctgcaatcaagcaaaataaaccactggaccagttaacaattatgatatttccttcaaacaatttgatatatatttcatacaat 26414461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 26414745 - 26414618
Alignment:
Q  364 acacccagtggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcataattgtatcacaactacgca 462  Q
    |||| ||| ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||| ||||||||||||  || ||| | ||| ||    
T  26414745 acactcaggggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattaaattaggcataatcttaacactagtactca 26414646  T
Q  463 gttggcgcagcggaaatgttgtttgttt 490  Q
    ||||| ||||| ||||||  ||||||||    
T  26414645 gttggtgcagcagaaatgaagtttgttt 26414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 28740053 - 28740009
Alignment:
Q  369 cagtggcggatcttcatagggaccagcaggtgccatggtatcccc 413  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||    
T  28740053 cagtggcgcatcttcatagggacctgcaggtgccatggtaccccc 28740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 984887 - 984958
Alignment:
Q  373 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 443  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  984887 ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattagattaggcata 984958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 2e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 186 - 363
Target Start/End: Complemental strand, 19296149 - 19295972
Alignment:
Q  186 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgac 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||    
T  19296149 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacactaac 19296050  T
Q  286 agacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19296049 agacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 19295972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 368 - 720
Target Start/End: Original strand, 37952677 - 37953037
Alignment:
Q  368 ccagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttgg 467  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  37952677 ccagtggcggatcttcacagggacctgcatgtgccatggtacccccaacttttctatatatattagattaggcataattgtatctcaactatgcagttgg 37952776  T
Q  468 cgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctc-----------tttctgttatatttttactattttgttnn 556  Q
    ||||| ||||||| |||||| || ||||| |||||||||||||||| |||||||||||||           |||||||||||||||||||||||||||      
T  37952777 cgcagtggaaatgatgtttgcttttcttgagtaggtcgcgggttcgacccttccatcctctttcttttatatttctgttatatttttactattttgttca 37952876  T
Q  557 nnnnnnnnnngcctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttc 656  Q
                |||||||  |||||| ||| |||||| ||||| |||  ||||||||| || ||||||||||||||||||| ||||||||||||  |||    
T  37952877 aaaaaaaat---ctcctatgtggattcaaaccggcatctcccactctgggatcaagcaaaatgaaccactggaccagttaactgttatgatatttacttc 37952973  T
Q  657 acccagctttatatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    || ||| || ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  37952974 acacagtttaatatatatttcatacaattttggcaccccccaaaaaatattctaagatccgcca 37953037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 758 - 850
Target Start/End: Complemental strand, 19295950 - 19295858
Alignment:
Q  758 atcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 850  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19295950 atcagaggtgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 19295858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 602 - 720
Target Start/End: Original strand, 10890590 - 10890708
Alignment:
Q  602 ctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttct-ttcacccagctttatatatatttcatacaattctggcaccccccata 700  Q
    ||||| |||||||| | ||||||||||||||||||||| |||| ||  |||| || |  || ||| |||||||||||||||||||||||||||||| | |    
T  10890590 ctgcattcaagcaaaacaaaccactggaccagttaacaattat-atccttctcttgaaacaacttaatatatatttcatacaattctggcacccccaaga 10890688  T
Q  701 aaatattccaagatccgcca 720  Q
    ||||||| ||||||||||||    
T  10890689 aaatatttcaagatccgcca 10890708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 619 - 720
Target Start/End: Complemental strand, 5572647 - 5572546
Alignment:
Q  619 aaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaaatattccaagatccgc 718  Q
    ||||||||||||||||||||| ||||    ||  |||||  || ||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  5572647 aaaccactggaccagttaacaattatatccttattttcaaacaacttaatatatatttcatacaattttggcacccccaataaaatatttcaagatccgc 5572548  T
Q  719 ca 720  Q
    ||    
T  5572547 ca 5572546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 631 - 705
Target Start/End: Complemental strand, 5643325 - 5643251
Alignment:
Q  631 cagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaaata 705  Q
    ||||||||| || |||||| |||||||  |||||| |||||||||||||| |||| ||| |||||| | ||||||    
T  5643325 cagttaacatttttgatatatctttcaaacagcttaatatatatttcatagaattttggtacccccgagaaaata 5643251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 4e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 369 - 720
Target Start/End: Complemental strand, 48976095 - 48975727
Alignment:
Q  369 cagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattt----------tagattaggcataattgtatcacaacta 458  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| | || | ||||||| |          || ||||||||||||||| | |||||||    
T  48976095 cagtggcggatcttcatagggacctgcaggtgccatggtaccccctatatatatatatatatatatatatattaaattaggcataattgtgttacaacta 48975996  T
Q  459 cgcagttggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttct------gttatatttttactattttg 552  Q
    ||||  |||||| | |||| || | ||||||| |||||||||||||||||||||| | |||||||||||||| |      ||||||||||||||||||||    
T  48975995 cgcaaatggcgctgtggaattgatttttgtttttcttgcgtaggtcgcgggttcgactcttccatcctctttatatttatgttatatttttactattttg 48975896  T
Q  553 ttnnnnnnnnnnnngcctcct-ataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatattt 651  Q
    ||              ||||| ||  |||||| ||||||||||||| || |||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  48975895 ttcaaaaaaaaaaaagctccttatgtggattcaaactggcatcccctactctgctatcaagcaaaataaaccactagaccagttaacagttatgatattt 48975796  T
Q  652 ctttcacccagctttatatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48975795 ctttcacacagtttaatatatatttcatacaattctggcaccccgcataaaatattccaagatccgcca 48975727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 602 - 716
Target Start/End: Complemental strand, 43535682 - 43535568
Alignment:
Q  602 ctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataa 701  Q
    |||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||  ||| || |||||||||||||||||| ||||||||||| | ||    
T  43535682 ctgcaatcaagcaaaataaatcactggatcagttaacaattatgatatttctttcaaacagtttcatatatatttcatacaatactggcacccccaagaa 43535583  T
Q  702 aatattccaagatcc 716  Q
    ||| || ||||||||    
T  43535582 aatttttcaagatcc 43535568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 594 - 695
Target Start/End: Original strand, 32241064 - 32241165
Alignment:
Q  594 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 693  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||  ||||| ||| || | |||||||||||||||| ||||||||    
T  32241064 cccctaccctgcaatcaagcaaaataaaccactggatcagttaacaattatgatactttcttcacacagtttaaaatatatttcatacaatactggcacc 32241163  T
Q  694 cc 695  Q
    ||    
T  32241164 cc 32241165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 23999129 - 23999176
Alignment:
Q  368 ccagtggcggatcttcatagggaccagcaggtgccatggtatccccaa 415  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  23999129 ccagtggcggatcttcataaggacctgcaggagccatggtacccccaa 23999176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 32240741 - 32240812
Alignment:
Q  373 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 443  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  32240741 ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattagattaggcata 32240812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 43535906 - 43535799
Alignment:
Q  373 ggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcag 472  Q
    ||||||||||| | || ||  ||||||| ||||||| ||| ||  ||||||||||| |||||||||||||||   || ||| | ||| ||||||| ||||    
T  43535906 ggcggatcttccttggtactggcaggtgtcatggtaccccaaagttttctatatatattagattaggcataaccttaacactagtactcagttggtgcag 43535807  T
Q  473 cggaaatg 480  Q
    ||||||||    
T  43535806 cggaaatg 43535799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 720
Target Start/End: Complemental strand, 52456151 - 52456005
Alignment:
Q  573 tataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatat 672  Q
    |||| |||||| |||||||| ||||  | ||||| |||||||| | |||||| ||||| |||||||| ||||    |||  ||||  || ||| ||||||    
T  52456151 tatagggattcaaactggca-cccctgctctgcattcaagcaaaacaaaccattggactagttaacaattatatccttttcttcaaacaacttaatatat 52456053  T
Q  673 atttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    |||||||||||||||  ||||| | | |||||||| ||||||||||||    
T  52456052 atttcatacaattctaacaccctcaaaaaaatatttcaagatccgcca 52456005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 395 - 720
Target Start/End: Original strand, 21976213 - 21976546
Alignment:
Q  395 caggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttctct 494  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||| || |||| |||| |||    
T  21976213 caggtgccatggtacccccaacttctctatatatattagattaggcatatttgtatcacaactacgtagttggcgcagtggaagtgatgttagtttttct 21976312  T
Q  495 tgcgtaggtcgcgggttcgtcccttccatcctctttct------------gttatatttttactattttgttnnnnnnnnnnnngcctcctataaggatt 582  Q
    || |||||||||||||| | |||| ||||| |||||||            ||||||||||||||||||||||              |||||||  |||||    
T  21976313 tgtgtaggtcgcgggtttgaccctcccatcttctttctttttatatttctgttatatttttactattttgttaaaaaaaaag----ctcctatgtggatt 21976408  T
Q  583 cgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcataca 682  Q
    ||||| ||||||| | ||  |||||| |||||| |||||||||||||||| ||||||||||| |||||||| |||| ||| || ||||||||||||||||    
T  21976409 cgaaccggcatcctctactttgcaataaagcaaaataaaccactggaccaattaacagttataatatttctctcacacagtttaatatatatttcataca 21976508  T
Q  683 attctggcaccccccataaaatattccaagatccgcca 720  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  21976509 attatggcaccccccataaaatattccaagatccgcca 21976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 594 - 693
Target Start/End: Original strand, 43428017 - 43428116
Alignment:
Q  594 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 693  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  ||| | ||| || | |||||||||||||||| ||||||||    
T  43428017 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcgcacagtttaaaatatatttcatacaatactggcacc 43428116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 7560058 - 7560013
Alignment:
Q  368 ccagtggcggatcttcatagggaccagcaggtgccatggtatcccc 413  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||    
T  7560058 ccagtggcggatcttccttgggacctgcaggtgccatggtatcccc 7560013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 9e-57; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 465 - 720
Target Start/End: Complemental strand, 23059438 - 23059185
Alignment:
Q  465 tggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttatatttttactattttgttnnnnnnnnnn 564  Q
    |||||||| ||||||| ||||||||| ||||||||||   ||||||||| |||||||||||||||||| |||||||||||||||||||||              
T  23059438 tggcgcagtggaaatgatgtttgtttttcttgcgtagactgcgggttcgacccttccatcctctttctattatatttttactattttgttcaaaaaaaaa 23059339  T
Q  565 nngcctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagct 664  Q
        |  ||||  |||||||||| ||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||| |||  |||| ||| |    
T  23059338 aaaac--ctatgtggattcgaaccggcatcccctactctgcaatcaagcaaaataaaccgctggaccagttaacagttatgataattccctcacacagtt 23059241  T
Q  665 ttatatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23059240 taatatatatttcatacaattctggcaccccccatataatattccaagatccgcca 23059185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 388 - 720
Target Start/End: Original strand, 6956138 - 6956475
Alignment:
Q  388 ggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttg 487  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||  |||||||||||| |||||||||| ||  |||||||||||||  ||||||  ||| |    
T  6956138 ggacctgcaggtgccatggtacccccaacttttctatatatt--agattaggcatacttgtatcacagctgtgcagttggcgcagtagaaatgacgttag 6956235  T
Q  488 tttctcttgcgtaggtcgcgggttcgtcccttccatcctctttct-----------gttatatttttactattttgttnnnnnnnnnnnngcctcctata 576  Q
    ||| ||||| |||||||||||||| | |||| |||||||||||||           ||||||||||||||||||||||              |||||||     
T  6956236 tttttcttgtgtaggtcgcgggtttgaccctcccatcctctttcttttatatttttgttatatttttactattttgttcagaaaaaag----ctcctatg 6956331  T
Q  577 aggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatattt 676  Q
     ||| || ||| ||||||||| || |||||||||||||| |||||| ||| ||||| |||||||||||||||||||| || | ||| || ||||||||||    
T  6956332 tggaatcaaaccggcatcccctactctgcaatcaagcaaaataaactactagaccaattaacagttatgatatttctctctcacagtttaatatatattt 6956431  T
Q  677 catacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  6956432 catacaattctggcaccccccataaaatgttccaagatccgcca 6956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 23059484 - 23059439
Alignment:
Q  369 cagtggcggatcttcatagggaccagcaggtgccatggtatcccca 414  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  23059484 cagtggcggatcttcatagggacctgcaggtgccatggtaccccca 23059439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 778
Target Start/End: Complemental strand, 11602845 - 11602812
Alignment:
Q  745 ggacacgcctttgatcagaggtgttggtgccaca 778  Q
    |||||| |||||||||||||||||||||||||||    
T  11602845 ggacacacctttgatcagaggtgttggtgccaca 11602812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 569 - 720
Target Start/End: Original strand, 42926559 - 42926710
Alignment:
Q  569 ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttat 668  Q
    ||||||| |||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||    
T  42926559 ctcctatgaggatttgaactggcaccccccactccgcaatcaagcaatataaaccactggaccagttaacagttatgatatttccttcacacagtttaat 42926658  T
Q  669 atatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  42926659 atatatttcaatcatttctggcaccccccataaaatattccaagatccgcca 42926710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 394 - 523
Target Start/End: Original strand, 42926401 - 42926532
Alignment:
Q  394 gcaggtgccatggtatcccc--aacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttc 491  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42926401 gcaggtgccatggtacccccccaacatttctatatatattagattaggcataattgtatcacaactacgtagttggcgcagtggaaatgttgtttgtttc 42926500  T
Q  492 tcttgcgtaggtcgcgggttcgtcccttccat 523  Q
    |||||||||||| ||||||||| ||| |||||    
T  42926501 tcttgcgtaggttgcgggttcgacccctccat 42926532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 569 - 723
Target Start/End: Original strand, 12209939 - 12210091
Alignment:
Q  569 ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttat 668  Q
    |||||||  |||||||||| ||||||||| || |||||||||||||| |||||||| ||||||||| ||||||||| ||||||||| ||| ||| || ||    
T  12209939 ctcctatgtggattcgaaccggcatcccctactctgcaatcaagcaaaataaaccattggaccagtcaacagttataatatttcttacacacagtttaat 12210038  T
Q  669 atatatttcatacaattctggcaccccccataaaatattccaagatccgccattg 723  Q
    |||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||    
T  12210039 atatatttcaaacaattctgcca--ccccataaaatattccaagatccgccattg 12210091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 370 - 541
Target Start/End: Complemental strand, 35608647 - 35608482
Alignment:
Q  370 agtggcggatcttcatagggaccagcaggtgccatggt---atccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttg 466  Q
    ||||||||||||||| ||| ||| ||||||||||||||   | ||||||  ||||||||||| ||||||||||||||||||||||||||||| | |||      
T  35608647 agtggcggatcttcacaggaacctgcaggtgccatggtggtacccccaaattttctatatatattagattaggcataattgtatcacaactatgtagt-- 35608550  T
Q  467 gcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttatattt 541  Q
           ||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  35608549 -------ggaaatgatgtttgtttttcttgcgtaggttgcgggttcgacccttccatcctctttcttttatattt 35608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 369 - 480
Target Start/End: Original strand, 12209779 - 12209890
Alignment:
Q  369 cagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggc 468  Q
    ||||||| ||||||||||| |||| |||| ||||||| || ||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||     
T  12209779 cagtggcagatcttcatagagacctgcagatgccatgatacccccaacttttctatatatattcgattaggcatacttgtatcacaactacgcagttggt 12209878  T
Q  469 gcagcggaaatg 480  Q
    |||| |||||||    
T  12209879 gcagtggaaatg 12209890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 579 - 720
Target Start/End: Complemental strand, 9197382 - 9197241
Alignment:
Q  579 gattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttca 678  Q
    |||||||||  ||| |||| ||||||||||||||||| ||||| ||| |||| |||||||| |||||||| ||  |||||  || || | ||||||||||    
T  9197382 gattcgaacccgcaccccctaccctgcaatcaagcaaaataaagcaccggacaagttaacaattatgatactttcttcacatagtttaaaatatatttca 9197283  T
Q  679 tacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    |||||| ||||||||||| | ||||| || ||||||||||||    
T  9197282 tacaatactggcacccccaagaaaatttttcaagatccgcca 9197241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 696
Target Start/End: Complemental strand, 35608444 - 35608316
Alignment:
Q  569 ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttat 668  Q
    |||||||  |||||| ||| | ||||||| || |||||||||||||| || |||||||| |||| ||||||||||| ||||||  ||||| ||| || ||    
T  35608444 ctcctatgtggattcaaaccgacatcccctactctgcaatcaagcaaaatgaaccactgaaccaattaacagttataatatttacttcacacagtttaat 35608345  T
Q  669 atatatttcatac-aattctggcaccccc 696  Q
    ||||||||||| | |||||||||| ||||    
T  35608344 atatatttcatgcaaattctggcatcccc 35608316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 667 - 720
Target Start/End: Complemental strand, 32553742 - 32553689
Alignment:
Q  667 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 720  Q
    |||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  32553742 atatatatttcatacaattctggcacccccaagaaaatatttcaagatccgcca 32553689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 603 - 714
Target Start/End: Original strand, 9702095 - 9702206
Alignment:
Q  603 tgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaa 702  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||  |  || |||||||||||||||| |||| ||||||||||||||    
T  9702095 tgcaatcaagcaaaataaaccactggaccagttaacaattgtgatatttccttcacaaaatttaatatatatttcatacatttctcgcaccccccataaa 9702194  T
Q  703 atattccaagat 714  Q
    ||||| ||||||    
T  9702195 atatttcaagat 9702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 594 - 720
Target Start/End: Complemental strand, 49138055 - 49137929
Alignment:
Q  594 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 693  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  ||||| ||| || | |||||||||||||||| ||||||||    
T  49138055 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcacacagtttaaaatatatttcatacaatactggcacc 49137956  T
Q  694 ccccataaaatattccaagatccgcca 720  Q
    ||| | ||| | || ||||||||||||    
T  49137955 cccaagaaattttttcaagatccgcca 49137929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 482 - 537
Target Start/End: Original strand, 9701966 - 9702021
Alignment:
Q  482 tgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttat 537  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||    
T  9701966 tgtttgtttttcttgcgtaggttgcgggttcgacccttccatcctctttcttttat 9702021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 21768622 - 21768658
Alignment:
Q  314 tgagaacatgaattatttgaacgtaaccacatgtgtc 350  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21768622 tgagaaaatgaattatttgaacgtaaccacatgtgtc 21768658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 49138284 - 49138213
Alignment:
Q  373 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 443  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  49138284 ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattagattaggcata 49138213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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