View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7247_low_3 (Length: 460)
Name: NF7247_low_3
Description: NF7247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7247_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 90 - 446
Target Start/End: Complemental strand, 36703332 - 36702976
Alignment:
| Q |
90 |
caccatgggaaactttgtccttgcacaccatgaatttcctccaagggtttctatcttgacggtgaatagcctttcaagacttaatattcctcattgcctc |
189 |
Q |
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| T |
36703332 |
caccatgggaaactttgtccttgcacaccatgaatttcctccaagggtttctatcttgacggtgaatagcctttcaagacttaatattcctcattgcctc |
36703233 |
T |
|
| Q |
190 |
cattttgaattttggttgataccagaggaggaagcacttatcctccaaacgtgtgtaagttataatccaagttttccttcaacactcatgttgaattaag |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36703232 |
cattttgaattttggttgataccagaggaggaagcacttatcctccaaacatgtgtaagttataatccaagtcttccttcaacactcatgttgaattaag |
36703133 |
T |
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| Q |
290 |
gcagttgaggaaacacaatgcttattgatgaggaggtggaaatttgatctctactctttcttgtgtttgattcgaagggttaatttgcatgtgttgcggt |
389 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36703132 |
gcagttgaggaaacacaatggttattcatgaggaggtggaaatttgatctctactctttcttgtgtttgattcgaagggttaatttgcatgtgttgcggt |
36703033 |
T |
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| Q |
390 |
tcatcatagttagcacaagctttctttcctcataaccctcacattgatgaaatttct |
446 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
36703032 |
tcatcatagttagcacaagctttctttcctcacaaccctcacatcgatgaaatttct |
36702976 |
T |
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