View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7247_low_6 (Length: 266)
Name: NF7247_low_6
Description: NF7247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7247_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 30168935 - 30169177
Alignment:
| Q |
30 |
agaagataactacaagtctacaacacctaagattgataccagtaacggcatataaccacctcaaatctcgattgatgcattaatatttttcaaaacatat |
129 |
Q |
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| T |
30168935 |
agaagataactacaagtctacaacacctaagattgataccagtaactgcatataaccacctcaaatctcgattgatgcattaatatttttcaaaacatat |
30169034 |
T |
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| Q |
130 |
tccaattgtgaactaggctgagctagataatcatggttgcaaca-tcggaagcttc-----------------ctttcgtctccttgatctaccacgcct |
211 |
Q |
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| T |
30169035 |
tccaattgtgaactaggctgagctggataatcattgctgtaacattcggaagcttcccaatcgtctctaaggtctttcgtctccttgatctaccacgcc- |
30169133 |
T |
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| Q |
212 |
ccccttgtattattgcccccacctctgcctgtcaatgttgatgt |
255 |
Q |
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| T |
30169134 |
ccccttgtattattgcccccgcctctgcctgtcaatgttgatgt |
30169177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 30190538 - 30190671
Alignment:
| Q |
20 |
aacatataaaagaagataactacaagtctacaacacctaagattgataccagtaacggcatataaccacctcaaatctcgattgatgcattaatattttt |
119 |
Q |
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| T |
30190538 |
aacatataaaagaagataactacaagtctacaacacctaagattgataccagtaactgcatataaccacctcaaatctcgattgatgcattaatattttt |
30190637 |
T |
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| Q |
120 |
caaaacatattccaattgtgaactaggctgagct |
153 |
Q |
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| T |
30190638 |
caaaacatattccaattgtgaactaggctgagct |
30190671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 30155432 - 30155525
Alignment:
| Q |
20 |
aacatataaaagaagataactacaagtctacaacacctaagattgataccagtaacggcatataaccacctcaaatctcgattgatgcattaat |
113 |
Q |
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| T |
30155432 |
aacatataaaaaaaggtaactacaagtctacaacacctaagattgataccagtaactgcatataaccacctcaaatctcgattgatgcattaat |
30155525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 30150813 - 30150862
Alignment:
| Q |
18 |
taaacatataaaagaagataactacaagtctacaacacctaagattgata |
67 |
Q |
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| T |
30150813 |
taaacatgtaaaagaagataactacaagtctacaacacctaagattgata |
30150862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 30171574 - 30171640
Alignment:
| Q |
99 |
gattgatgcattaatatttttcaaaacatattccaattgtgaactaggctgagctagataatcatgg |
165 |
Q |
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| T |
30171574 |
gattgatgcattaatatttttcaagacattttccagttgtgaactagactgagcttgattatcatgg |
30171640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 30187115 - 30187181
Alignment:
| Q |
99 |
gattgatgcattaatatttttcaaaacatattccaattgtgaactaggctgagctagataatcatgg |
165 |
Q |
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| T |
30187115 |
gattgatgcattaatatttttcaagacattttccagttgtgaactagactgagcttgattatcatgg |
30187181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 30165908 - 30165968
Alignment:
| Q |
93 |
aatctcgattgatgcattaatatttttcaaaacatattccaattgtgaactaggctgagct |
153 |
Q |
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| T |
30165908 |
aatcttgattgatgcattaatatttttcaagacattttccagttgtgaactagactgagct |
30165968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 30170110 - 30170145
Alignment:
| Q |
216 |
ttgtattattgcccccacctctgcctgtcaatgttg |
251 |
Q |
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| T |
30170110 |
ttgtattattgcccccgcctctgcctgtcaatgttg |
30170145 |
T |
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